Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00268 ATGCAAATATTCCACAGCGCTTCTCTGTGTCTTTTACGTACCTTAGTAATAGTTATGTCTCACTTTTTCATTCCTTTGGCCTTTTTCACATTGCTCCTCCTCATACAGGAGGCCATAGCTGGCATTGACCCAAATTGGTACGATGCTCATGCAACCTTCTATGGTGGTCCCTCTGGAGCTGGAACCATGCAGGGAGCCTGTGGTTATGGTGATCTCTACAAACAAGGATATGGACTTGCGACCACAGCACTAAGCACGGCTTTATTCAATCAAGGAGCTACTTGTGGTGCTTGTTTTCAGTTAGTTTGTGTCAACGATCCTCAATGGTGCATAAAGGGCGCAAGGCCAATTACAGTAACCGCAACAAATTTTTGTCCCCCAAATTCCGCCCAGCCCGGTGCTTGTAACCCACCACTAAAACACTTTGACTTGAGTTATAAAATGTTCACTTCTATTGCCTACGAAAAAGGCGGTATCATACCCGTTAAATATCGACGTGTTTCATGTGTGAAACAAGGGGGTGTCAGGTTTGAGATTAATGGAAACCCTAATTTTTTGTTTGTTTTGGTGTTCAATGTTGCCAATGCCGGTGATGTTTCTCGTGTTAGTGTCAAAGGGTCTAAGACTGGATGGATTCCCATGAAACGCAATTATGGACAAAAGTGGAATACAGGAGTGAATTTGGTTGGACAAGCTTTATCTTTTCAAGTTACTACAAGTGATGGAAAAACTTTAGAGTTTGATTCAGTTTCTCCATACAACTGGCAATTTGGACAGACTTATGAGGGCAGGGGAAATTTTTAG 804 0.4254 MQIFHSASLCLLRTLVIVMSHFFIPLAFFTLLLLIQEAIAGIDPNWYDAHATFYGGPSGAGTMQGACGYGDLYKQGYGLATTALSTALFNQGATCGACFQLVCVNDPQWCIKGARPITVTATNFCPPNSAQPGACNPPLKHFDLSYKMFTSIAYEKGGIIPVKYRRVSCVKQGGVRFEINGNPNFLFVLVFNVANAGDVSRVSVKGSKTGWIPMKRNYGQKWNTGVNLVGQALSFQVTTSDGKTLEFDSVSPYNWQFGQTYEGRGNF 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00268 267 Pfam Lytic transglycolase 81 164 IPR009009 -
Trre13g00268 267 SMART dpbb_1 81 164 IPR007112 -
Trre13g00268 267 SUPERFAMILY PHL pollen allergen 171 263 IPR036749 -
Trre13g00268 267 PANTHER EXPANSIN-A15 28 264 IPR002963 GO:0009664
Trre13g00268 267 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 64 174 IPR007112 -
Trre13g00268 267 CDD DPBB_EXPA_N 46 169 - -
Trre13g00268 267 SUPERFAMILY Barwin-like endoglucanases 45 192 IPR036908 -
Trre13g00268 267 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 184 263 IPR007117 -
Trre13g00268 267 Pfam Expansin C-terminal domain 175 252 IPR007117 -
Trre13g00268 267 Gene3D - 173 267 IPR036749 -
Trre13g00268 267 PRINTS Expansin signature 249 265 IPR002963 GO:0009664
Trre13g00268 267 PRINTS Expansin signature 149 162 IPR002963 GO:0009664
Trre13g00268 267 PRINTS Expansin signature 185 206 IPR002963 GO:0009664
Trre13g00268 267 PRINTS Expansin signature 117 127 IPR002963 GO:0009664
Trre13g00268 267 PRINTS Expansin signature 173 185 IPR002963 GO:0009664
Trre13g00268 267 PRINTS Expansin signature 220 241 IPR002963 GO:0009664
Trre13g00268 267 PRINTS Expansin signature 132 149 IPR002963 GO:0009664
Trre13g00268 267 PRINTS Expansin signature 103 114 IPR002963 GO:0009664
Trre13g00268 267 PRINTS Expansin signature 76 90 IPR002963 GO:0009664
Trre13g00268 267 Gene3D - 35 169 IPR036908 -
Trre13g00268 267 PRINTS Expansin/Lol pI family signature 45 60 IPR007118 GO:0005576
Trre13g00268 267 PRINTS Expansin/Lol pI family signature 211 225 IPR007118 GO:0005576
Trre13g00268 267 PRINTS Expansin/Lol pI family signature 85 103 IPR007118 GO:0005576
Trre13g00268 267 PRINTS Expansin/Lol pI family signature 249 263 IPR007118 GO:0005576
Trre13g00268 267 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Trre13g00268 267 PRINTS Expansin/Lol pI family signature 157 173 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00268 Trre-Chr13 2170586 2171693 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00268 3 267 Expansin Gene Family AT5G39280 54.444 1.47e-106 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00268 - - tpra:123886237 465.692