Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00267 ATGGCTTTGTCTCATTCTTTGGTTCCTTTGACATGTTTTATGTTGCTTCTCGTACAGGCCATGGCTCAAATTGATCCCAATTGGTACGATGCTCGTGCAACTTTCTATGGTGATGCAGCAGGGGGTGAAACCATGCAGGGGGCTTGTGGTTATGGTGATCTTTTCCAACAAGGATATGGGCTTGCAACCACGGCACTAAGCACAGCTCTATTTAACAAAGGATCTACTTGTGGTGCATGTTTTGAGATTACTTGTGTCAACGATCCTCAATGGTGTATAAAGGATGCAAAGTCAATCATAGTAACTGCGACAAATTTTTGTCCTCCAGATTACTCAAAAACCACCGATATTTGGTGTAATCCACCGCAAAAACACTTTGACTTGAGTTATAAAATGTTCACCTCTATTGCCTATTATAGAGCCGGTGTCATCCCGGTTAAATATCGTCGCGTTCCATGCTCCAAAAGTGGGGGTGTTAAGTTTGAACTCAATGGAAACCCTTATTTCTTGCTTGTTTTGATATATAATGTTGCCAATGCTGGTGATATCTCTAGTGTGAGTATCAAAGGGTCTAATACTGAATGGATTCCCATGACACGCAATTGGGGACAAAAATGGAATAATAATGGAAACAATTTGGTAGGACAAGCTTTGTCATTTCAAGTTACTACAAGTGATGAAAAAACCATGCAGTTTGATTCAGTTTCTCCTTCAAATTGGCAATTTGGACAGACTTATGAGGGCAATGGAAATTTTTAG 759 0.4018 MALSHSLVPLTCFMLLLVQAMAQIDPNWYDARATFYGDAAGGETMQGACGYGDLFQQGYGLATTALSTALFNKGSTCGACFEITCVNDPQWCIKDAKSIIVTATNFCPPDYSKTTDIWCNPPQKHFDLSYKMFTSIAYYRAGVIPVKYRRVPCSKSGGVKFELNGNPYFLLVLIYNVANAGDISSVSIKGSNTEWIPMTRNWGQKWNNNGNNLVGQALSFQVTTSDEKTMQFDSVSPSNWQFGQTYEGNGNF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00267 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 248 IPR007117 -
Trre13g00267 252 Gene3D - 157 252 IPR036749 -
Trre13g00267 252 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Trre13g00267 252 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Trre13g00267 252 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
Trre13g00267 252 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Trre13g00267 252 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Trre13g00267 252 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Trre13g00267 252 Pfam Lytic transglycolase 63 148 IPR009009 -
Trre13g00267 252 CDD DPBB_EXPA_N 28 153 - -
Trre13g00267 252 SUPERFAMILY PHL pollen allergen 155 248 IPR036749 -
Trre13g00267 252 PRINTS Expansin signature 133 146 IPR002963 GO:0009664
Trre13g00267 252 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Trre13g00267 252 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Trre13g00267 252 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Trre13g00267 252 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Trre13g00267 252 PRINTS Expansin signature 116 133 IPR002963 GO:0009664
Trre13g00267 252 PRINTS Expansin signature 157 169 IPR002963 GO:0009664
Trre13g00267 252 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Trre13g00267 252 PRINTS Expansin signature 169 190 IPR002963 GO:0009664
Trre13g00267 252 SUPERFAMILY Barwin-like endoglucanases 14 176 IPR036908 -
Trre13g00267 252 Pfam Expansin C-terminal domain 159 237 IPR007117 -
Trre13g00267 252 PANTHER EXPANSIN-A15 14 249 IPR002963 GO:0009664
Trre13g00267 252 SMART dpbb_1 63 148 IPR007112 -
Trre13g00267 252 Gene3D - 17 154 IPR036908 -
Trre13g00267 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 158 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00267 Trre-Chr13 2166415 2167461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00267 24 252 Expansin Gene Family AT5G39280 66.376 1.88e-115 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00267 - - gmx:100789595 350.132