Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00253 ATGCCCACCTTCTCCTCTCTCCCTAGGTGGATTGGTGGAAAATTGTTTGGAAATAATCCCAAGAGCACAATCAACAACATTGGTGACAGCGGCGATGACACTGGTATTGCGGTCGTAGACGACAATCCAGTGACAAGCGTGGTGGAGTGTTACGCTTGCACACAAGTCGGTGTGCCAGTGTTCCACTCCACCAGCTGTGATAGCTGTCACCAACCAGAATGGGAAGCATCAGCAGGTTCTTACTTAGTTCCAATACAAAACCGTCCCGGAAAATTCGCAAGAGCAGTTACAGGGGCAAATTGGGGACCTTTAGGAAAAGTTTTAGATCCAAGAAGCAAGCGCGTGCAAATATGGAACCGCGCGTTGTTATTGGCGCGTGGTGTTGCGTTGGCAATCGATCCATTGTTTTTCTATGCGCTGTCGATAGGGAGAGAAGGTTCGCCATGTTTGTATATGGACGGTGGTTTGGCGGCGGTTGTTACGGTGGCGCGTACGGTTGTTGATGCGGTGCATCTGTTTCATGTTTTGTTGCAGTTTAGATTAGCGTATGTGTCTAGAGAATCGCTTGTTGTTGGATGTGGGAAACTCGTGTGGGACGCACGTGCCATTGCTTCTCATTATATGAGATCTTTCAAAGGATTTTGGTTTGATGTTTTTGTTATTCTTCCTGTTCCTCAGGCTGTGTTTTGGCTAGTAGTACCAAAATTGATAAGAGAAGAGAGGATTAAGATAATTATGACAACAATGCTATTGATTTTTTTGTTCCAATTTCTCCCTAAGGTTTACCATAGTATATCTATGATGAGAAGAATGCAAAAAGTCACAGGCTATATCTTTGGCACCATTTGGTGGGGATTTGGACTCAATCTCATAGCTTATTTCATTGCCTCTCATGTTGCCGGAGGGTGTTGGTATGTCCTTGCAATTCAACGCGTTGCATCGTGCCTTCAACAGCAATGTGAAAGAACTGCTGGATGCAGTCTCTCTCTGTCATGCTCAGAGGAAGTATGTTATCAGTCAATTTTGCCACCAGGAACCATTGGAAATCCATGTGGTGGAAACACAACAATGAGTAAGCCAGTGTGCTTAGATGTTGAAGGACCTTTCAAATATGGGATCTACCAATGGGCACTTCCTGTCATATCCAGCAATTCCTTAGCTGTCAAGATTCTTTATCCCATTTTTTGGGGTTTGATGACTCTCAGCACTTTTGGAAATGATCTTGAACCCACAAGTAACTGGCTAGAAGTGATTTTCAGCATATGCATTGTACTTGCTGGACTACTACTTTTCACTCTGTTGATTGGTAACATCCAGGTATTCTTACATGCAGTCATGGCAAAGAAGAGAAAGATGCAGTTGAGATGTCGTGACATGGAATGGTGGATGAGGAGGAGGCAGTTGCCATCCCGGTTAAGACAAAGAGTTCGGCATTTTGAACGTCAGAGATGGGCGGCCATGGGAGGAGAAGATGAGATGGAACTGATCAAAGACTTACCCGAGGGTCTGAGGAGAGACATCAAGCGCTATCTTTGCTTAGACCTCATTAAAAAGGTACCGTTATTCCATAACTTGGATGATCTTATTCTTGACAACATTTGTGATAGAGTGAAGCCCCTAGTCTTCTCTAGAGATGAAAAGATAATTAGAGAAGGTGATCCTGTACCAAGGATGGTATTTATTGTCCGTGGACGCATAAGGCGAAACCAAAGTCTCAGCAAAGGTGTGGTAGCAACAAGTGTCCTTGAACCAGGAGGCTTTTTAGGCGATGAACTTCTTTCGTGGTGCCTTAGACGTCCTTTTATAGACCGGCTTCCGGCCTCCTCAGCTACATTTGTGTGTCTCGAATCAACAGAAGCATTTGGTCTTGATGCTCAAAACTTGAGGTACATAACCGATCACTTCCGGTACAAATTTGCGAACGAGAGGCTTAAGAGAACAGCGAGATACTACTCGTCGAATTGGAGAACATGGGCTGCTGTCAACATTCAACTTGCTTATAGACGTTACAGGCAGAGGACTAGAGGTCCAGTGACTCCTGTAAGAGACAATGGCGGCACTGAGCGCAGGCTCTTGCAGTATGCCGCAATGTTCATGTCAATTAGGCCACATGATCATCTTGAATAA 2127 0.4476 MPTFSSLPRWIGGKLFGNNPKSTINNIGDSGDDTGIAVVDDNPVTSVVECYACTQVGVPVFHSTSCDSCHQPEWEASAGSYLVPIQNRPGKFARAVTGANWGPLGKVLDPRSKRVQIWNRALLLARGVALAIDPLFFYALSIGREGSPCLYMDGGLAAVVTVARTVVDAVHLFHVLLQFRLAYVSRESLVVGCGKLVWDARAIASHYMRSFKGFWFDVFVILPVPQAVFWLVVPKLIREERIKIIMTTMLLIFLFQFLPKVYHSISMMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCLQQQCERTAGCSLSLSCSEEVCYQSILPPGTIGNPCGGNTTMSKPVCLDVEGPFKYGIYQWALPVISSNSLAVKILYPIFWGLMTLSTFGNDLEPTSNWLEVIFSICIVLAGLLLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHFERQRWAAMGGEDEMELIKDLPEGLRRDIKRYLCLDLIKKVPLFHNLDDLILDNICDRVKPLVFSRDEKIIREGDPVPRMVFIVRGRIRRNQSLSKGVVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCLESTEAFGLDAQNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQLAYRRYRQRTRGPVTPVRDNGGTERRLLQYAAMFMSIRPHDHLE 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00253 708 Gene3D Jelly Rolls 519 637 IPR014710 -
Trre13g00253 708 SMART cnmp_10 521 647 IPR000595 -
Trre13g00253 708 Gene3D Helix hairpin bin 447 512 - -
Trre13g00253 708 Pfam Ion transport protein 116 439 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre13g00253 708 ProSiteProfiles cAMP/cGMP binding motif profile. 521 631 IPR000595 -
Trre13g00253 708 CDD CAP_ED 521 631 IPR000595 -
Trre13g00253 708 SUPERFAMILY cAMP-binding domain-like 448 635 IPR018490 -
Trre13g00253 708 SUPERFAMILY Voltage-gated potassium channels 109 442 - -
Trre13g00253 708 Gene3D - 147 444 - -
Trre13g00253 708 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 105 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00253 Trre-Chr13 2021021 2025571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00253 41 708 Ion Channels AT5G15410 79.179 0.0 1050
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00253 K05391 - gmx:100798823 1211.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00253 13 2021021 2025571 Trre13g00253 13 2021021 2025571 ECH