Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00252 ATGCTTATTGCTGGTTATGATCTTGACATGTCATATATTACAGATAGAGTATTAGCAATGTCATTTCCTGCTGAACGTATGAGAGCAGTGTATAGAAATCCTCTTTGGCAAGTCAAATCTGTTTTGGATATGAGACATTATGATCATTATAAGGTCTATAATTTGTGCATAGAAGAAAATTATGATCCAGCACACTTCTATGGTCGTGTCGAAGCATACCCTTTTGATGACAATCATGTGCCATCTCTTGAAATGATTAAAGCTTTCTGTGAAAGTGTGGATTCATGGCTATCAAAAGATCCAAAAAACATTGCTGTTATTCATTGCATGGCAGGTAAAGGTAGAACTGGTTTGATGGTGAGTTCATACCTAACTTATTGCGGCATGTCAGCAGAAGAAGCTCTTCAATTATACGCAGATAGAAGGACGACAAATAATGAAGGAGTATCAATACCAAGCCAACGTCGATATGTAGGGTACTGGGAAAGTCTACTTTCTGTTCCCAGAGGAACTGGATATGGACCTCCAAATGTAAATTTGCCTCAACCATGTAACAGAGAATTGAGGCGAATCCGACTGTATGATACTGTCAACATTAACACAGTTTTCTTTGTTATATCAGAACTGCAGGAGATTCCAAATGAGGTCTACCGTCCACCAGTGGAAGTTTGTAGGAGCAGCTGCAGAGAGATTAAGAAAGGTTATCAAAGAACAAACAGTCCTCGCTATTATATTTCCATTCCTGAAGGTGATGAAGATGGAACAACATCCGAAATAGAAGAACCCCGTGTTGTAGTTCAAATGGATACAGAGAGTCCTGCAATATACCAAAAATCTTGTTTGGACCATTATTTTGAAAAACCTATACAAGTAACTGGAGATGTACGTGTGATATTCTACGAGAAAATGATGGGAGGCCGTCTTTTCTACTGCTGCTTTAATACAGCTTTCATTAGGAACAGCTTACTGCAGCTCACAGTACAGGATTTGGACAAAGTTGGGAAGAAAGGAAGATCAATATGTGGCCCTACATTTTGCCTAGAATTATTGTTTGGTCCTGCTAATGCAGGATATTCATCATCTAGTCTTCTATCTGTTAGTGATCATTCTAGTGATGATTCATTATAA 1128 0.3839 MLIAGYDLDMSYITDRVLAMSFPAERMRAVYRNPLWQVKSVLDMRHYDHYKVYNLCIEENYDPAHFYGRVEAYPFDDNHVPSLEMIKAFCESVDSWLSKDPKNIAVIHCMAGKGRTGLMVSSYLTYCGMSAEEALQLYADRRTTNNEGVSIPSQRRYVGYWESLLSVPRGTGYGPPNVNLPQPCNRELRRIRLYDTVNINTVFFVISELQEIPNEVYRPPVEVCRSSCREIKKGYQRTNSPRYYISIPEGDEDGTTSEIEEPRVVVQMDTESPAIYQKSCLDHYFEKPIQVTGDVRVIFYEKMMGGRLFYCCFNTAFIRNSLLQLTVQDLDKVGKKGRSICGPTFCLELLFGPANAGYSSSSLLSVSDHSSDDSL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00252 375 ProSiteProfiles C2 tensin-type domain profile. 199 354 IPR014020 -
Trre13g00252 375 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 87 142 IPR000387 GO:0016311|GO:0016791
Trre13g00252 375 Gene3D - 226 356 - -
Trre13g00252 375 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 5 165 IPR029021 -
Trre13g00252 375 Pfam Tyrosine phosphatase family 89 139 IPR026893 GO:0004721
Trre13g00252 375 ProSiteProfiles Phosphatase tensin-type domain profile. 1 168 IPR029023 -
Trre13g00252 375 Pfam C2 domain of PTEN tumour-suppressor protein 276 351 IPR014020 -
Trre13g00252 375 SMART PTEN_C2_2 181 353 IPR014020 -
Trre13g00252 375 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 261 353 IPR035892 -
Trre13g00252 375 ProSitePatterns Tyrosine specific protein phosphatases active site. 107 117 IPR016130 GO:0016311|GO:0016791
Trre13g00252 375 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 5 358 - -
Trre13g00252 375 Gene3D Protein tyrosine phosphatase superfamily 3 175 IPR029021 -
Trre13g00252 375 CDD PTP_PTEN 9 164 IPR045101 GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00252 Trre-Chr13 2014144 2016996 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00252 1 358 Protein tyrosine phosphatase (PTP) family AT5G39400 70.833 0.0 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00252 K01110 - gmx:100809938 668.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00252 13 2014144 2016996 Trre13g00252 13 2014144 2016996 ECH