Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00251 ATGGGGTTGAAACTAACAAAGGACACTCCACAACCCAAAATTTGTAGCCCAGCAAGTTTGGAACTACATCAACGCATGATTCATTACCTTACCAAGAATTTTATCCGTAACTTGGTATCTAAGCAAAGGAGAAGAATGCTTATTGCTGGTTATGATCTTGACATGTCATATATTACAGATAGAGTATTAGCAATGTCATTTCCTGCTGAACGTATGAGAGCAGTGTATAGAAATCCTCTTTGGCAAGTCAAATCTGTTTTGGATATGAGACATTATGATCATTATAAGGTCTATAATTTGTGCATAGAAGAAAATTATGATCCAGCACACTTCTATGGTCGTGTCGAAGCATACCCTTTTGATGACAATCATGTGCCATCTCTTGAAATGATTAAAGCTTTCTGTGAAAGTGTGGATTCATGGCTATCAAAAGATCCAAAAAACATTGCTGTTATTCATTGCATGGCAGGTAAAGGTAGAACTGGTTTGATGGTGAGTTCATACCTAACTTATTGCGGCATGTCAGCAGAAGAAGCTCTTCAATTATACGCAGATAGAAGGACGACAAATAATGAAGGAGTATCAATACCAAGCCAACGTCGATATGTAGGGTACTGGGAAAGTCTACTTTCTGTTCCCAGAGGAACTGGATATGGACCTCCAAATGTAAATTTGCCTCAACCATGTAACAGAGAATTGAGGCGAATCCGACTGTATGATACTGTCAACATTAACACAGTTTTCTTTGTTATATCAGAACTGCAGGAGATTCCAAATGAGGTCTACCGTCCACCAGTGGAAGTTTGTAGGAGCAGCTGCAGAGAGATTAAGAAAGGTTATCAAAGAACAAACAGTCCTCGCTATTATATTTCCATTCCTGAAGGTGATGAAGATGGAACAACATCCGAAATAGAAGAACCCCGTGTTGTAGTTCAAATGGATACAGAGAGTCCTGCAATATACCAAAAATCTTGTTTGGACCATTATTTTGAAAAACCTATACAAGTAACTGGAGATGTACGTGTGATATTCTACGAGAAAATGATGGGAGGCCGTCTTTTCTACTGCTGCTTTAATACAGCTTTCATTAGGAACAGCTTACTGCAGCTCACAGTACAGGATTTGGACAAAGTTGGGAAGAAAGGAAGATCAATATGTGGCCCTACATTTTGCCTAGAATTATTGTTTGGTCCTGCTAATGCAGGATATTCATCATCTAGTCTTCTATCTGTTAGTGATCATTCTAGTGATGATTCATTATAA 1263 0.3848 MGLKLTKDTPQPKICSPASLELHQRMIHYLTKNFIRNLVSKQRRRMLIAGYDLDMSYITDRVLAMSFPAERMRAVYRNPLWQVKSVLDMRHYDHYKVYNLCIEENYDPAHFYGRVEAYPFDDNHVPSLEMIKAFCESVDSWLSKDPKNIAVIHCMAGKGRTGLMVSSYLTYCGMSAEEALQLYADRRTTNNEGVSIPSQRRYVGYWESLLSVPRGTGYGPPNVNLPQPCNRELRRIRLYDTVNINTVFFVISELQEIPNEVYRPPVEVCRSSCREIKKGYQRTNSPRYYISIPEGDEDGTTSEIEEPRVVVQMDTESPAIYQKSCLDHYFEKPIQVTGDVRVIFYEKMMGGRLFYCCFNTAFIRNSLLQLTVQDLDKVGKKGRSICGPTFCLELLFGPANAGYSSSSLLSVSDHSSDDSL 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00251 420 ProSitePatterns Tyrosine specific protein phosphatases active site. 152 162 IPR016130 GO:0016311|GO:0016791
Trre13g00251 420 ProSiteProfiles C2 tensin-type domain profile. 244 399 IPR014020 -
Trre13g00251 420 ProSiteProfiles Phosphatase tensin-type domain profile. 44 213 IPR029023 -
Trre13g00251 420 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN 31 213 - -
Trre13g00251 420 CDD PTP_PTEN 54 209 IPR045101 GO:0016791
Trre13g00251 420 Pfam C2 domain of PTEN tumour-suppressor protein 321 396 IPR014020 -
Trre13g00251 420 SMART PTEN_C2_2 226 398 IPR014020 -
Trre13g00251 420 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 306 398 IPR035892 -
Trre13g00251 420 Gene3D - 272 401 - -
Trre13g00251 420 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 30 403 - -
Trre13g00251 420 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 50 210 IPR029021 -
Trre13g00251 420 Gene3D Protein tyrosine phosphatase superfamily 30 212 IPR029021 -
Trre13g00251 420 Pfam Tyrosine phosphatase family 134 184 IPR026893 GO:0004721
Trre13g00251 420 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 132 187 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00251 Trre-Chr13 2014144 2017131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00251 1 403 Protein tyrosine phosphatase (PTP) family AT5G39400 67.407 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00251 K01110 - gmx:100809938 721.465