Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00248 ATGAGTTCCTATTCCAATGAGAAAGAGAACAATATTGTGGAATCCCATACCCCACAAATAGATGACAATGATACACTCTCAGCTATGGTACTAGGTACCAATTTGGTGTTTACTGCTGTTCTTAATGCTGCAATTGAACTCAACTTGTTTGAAATCATAGCTAAGGAAACTTCACCAAGTAATGGTGGATTCATTTCAACCTTTGAAATTGCTTCTAAGTTATTACCAACTCAACACCCTGACTTGCCTAATCGGCTAGACCGGATGTTGCGCTTGCTTGCTAGCCACTCTCTTTTGTCCGTTTCCACTCGGACAAATGATGATGATGGTAGCTTGGCGAGAGTTTATGGTCTCACACCATCCGGTAAATACTTTGTTAGTGGTGAAAATGATTGTGGCTATTTGGGTTCAATGACATCATATTTGTCTTACCCTGCTTCCTTAGGGGTGTGGTCGAATTTCAAGGAAGCAGTCATGAATCCACATATAGACCTATTCAAGAAAGTTCATGGAACATCTTTCTTTGAGTATTTTAAGAAAGATCCACAATTAAACGATATATTTAACAAATCAATGACTGATACAAGTGCAATTAACATGAAAAAAATCCTTGAAATATACAGAGGATTTGAGGGAATAACAACACTGGTTGATGTAGGAGGTGGAAATGGACAAAGTCTTAAAGCAATTATATCCAAATATCCATCAATAAAAGCAATTAATTTTGACCTCCCACAAGTGATTGAGAATACACCACCCTTTCCAGGGATTGAAAGTGTTGGAGGAACTATGTTTGAAAGTGTTCCACAAGGAGATACCATAATGCTTAAGTTTGTATGCCATAATTGGCCGGATGAAAAATGCTTAGAAATTTTAAGCAATTGTCACAAAGCTTTGCCTCTAAATGGTAAAGTCATTCTTGTGGAGTTCTTATTTCCAGAAGATCTAGGATCAACAAATAATGCATCTAAGATGGTTTCAACAATTGATAACATCATGTTTATTACAGCTGGTGGTAAGGAAAGAGCACTTCAAGAATATGAGAGTTTAGGTAAAAAATCTGGATTTTCTAAACTTCAAGTTATTTGTCGTGCTTTTTCCATTCTTGGAGTGATGGAACTATACAAGTAA 1131 0.366 MSSYSNEKENNIVESHTPQIDDNDTLSAMVLGTNLVFTAVLNAAIELNLFEIIAKETSPSNGGFISTFEIASKLLPTQHPDLPNRLDRMLRLLASHSLLSVSTRTNDDDGSLARVYGLTPSGKYFVSGENDCGYLGSMTSYLSYPASLGVWSNFKEAVMNPHIDLFKKVHGTSFFEYFKKDPQLNDIFNKSMTDTSAINMKKILEIYRGFEGITTLVDVGGGNGQSLKAIISKYPSIKAINFDLPQVIENTPPFPGIESVGGTMFESVPQGDTIMLKFVCHNWPDEKCLEILSNCHKALPLNGKVILVEFLFPEDLGSTNNASKMVSTIDNIMFITAGGKERALQEYESLGKKSGFSKLQVICRAFSILGVMELYK 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00248 376 PANTHER O-METHYLTRANSFERASE 29 356 IPR016461 GO:0008168
Trre13g00248 376 PIRSF O-mtase 5 376 IPR016461 GO:0008168
Trre13g00248 376 Pfam O-methyltransferase domain 151 357 IPR001077 GO:0008171
Trre13g00248 376 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 142 373 IPR029063 -
Trre13g00248 376 Gene3D Vaccinia Virus protein VP39 128 376 IPR029063 -
Trre13g00248 376 FunFam Caffeic acid 3-O-methyltransferase 5 125 - -
Trre13g00248 376 SUPERFAMILY "Winged helix" DNA-binding domain 24 129 IPR036390 -
Trre13g00248 376 Gene3D - 4 125 IPR036388 -
Trre13g00248 376 Pfam Dimerisation domain 40 94 IPR012967 GO:0046983
Trre13g00248 376 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 376 IPR016461 GO:0008168
Trre13g00248 376 FunFam Caffeic acid O-methyltransferase 129 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00248 Trre-Chr13 2001173 2004957 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00248 21 376 Monolignol Biosynthesis Gene Families AT5G54160 47.059 8.77e-105 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00248 - - gmx:100798295 494.582