Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00247 ATGAGTTCATATTCCAATGATAAAGAGAACCATGTAGTGGAAATTCTTACTCCACAAATAGATGATAATTATGATACCCTCTTAGCCATGGTGCTAGGTGCTAATTTAGTGTTTTCAGCAGTTCTAAATGCTGCAATTGAACTCACCTTGTTTGAGATCATAGCTAAAGAAACTTCACTAGATAATGGTAAATTCATGTCATGCTTTGAAATTGCTTCAAAGTTACCAACTCAACACTCTGACTTGCCTAATCGGCTCGACCGGATGTTGCGCTTGCTTGCTAGCTATTCTCTTCTGTCTATTTCCACTCGGACCAATGATGATGACGGTAGCTCGGTGAGAGTTTATGGTCTCACACCATCTGGTAAATACTTTGTTAATGGTGAAAATGATAATGGCTATATGGGTTCATTGGTATCATATTTGTCTCACCCAGCTTTGTCAGGGGTGTGGTTGAATTTGAAGGAAGCAGTTATGGACCCACAAATTGACCTATTCAAGAAAATTCATGGAATTTCTATCTATGATTACTTTAAGAAAGATCCACAAATAAACAACTTATTTAACAAATCAATGACTGATACATGTACAATTCACATGAAAAGAATCCTTGAAATATACAAAGGATTTGAGGGAATATCAACATTGGTTGATGTAGGAGGTGGAAATGGACAAAGCCTTAAAACAATTATATCCAAATATCCATCAATAAAGGCAATAAACTTTGATCTCCCACAAGTCATTGATAATACACCACCCTTTCCAGGGATTCAAAATGTTGGAGGAAGTATGTTTGAAAGTCTTCCACAAGGAGATGCCATAATGCTTAAGGTTGCTTGTATATGCCATAATTGGTCAGATGAAAAATGCTTTGAAATTTTAAGTAATTGTCACAAAGCTTTGCCTCCAAATGGTAAAGTCATTCCTGTGGAATTCTTATTCCCAGAAGATCTAGGATCAACAAATAATGCATCTAAGATGGTTTCAGCAATTGATAACCTCATGTTTATTACAGCTGGTGGTAAGGAAAGAGCACTTCAAGAATATGAGAGTTTAGGTAAAAAATCTGGATTTTCTAAACTTCAAGTTATTTGTCGTGCTTTTTCCATTCTTGGAGTGATGGAACTAAACAAGTAA 1137 0.3588 MSSYSNDKENHVVEILTPQIDDNYDTLLAMVLGANLVFSAVLNAAIELTLFEIIAKETSLDNGKFMSCFEIASKLPTQHSDLPNRLDRMLRLLASYSLLSISTRTNDDDGSSVRVYGLTPSGKYFVNGENDNGYMGSLVSYLSHPALSGVWLNLKEAVMDPQIDLFKKIHGISIYDYFKKDPQINNLFNKSMTDTCTIHMKRILEIYKGFEGISTLVDVGGGNGQSLKTIISKYPSIKAINFDLPQVIDNTPPFPGIQNVGGSMFESLPQGDAIMLKVACICHNWSDEKCFEILSNCHKALPPNGKVIPVEFLFPEDLGSTNNASKMVSAIDNLMFITAGGKERALQEYESLGKKSGFSKLQVICRAFSILGVMELNK 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00247 378 Pfam Dimerisation domain 41 94 IPR012967 GO:0046983
Trre13g00247 378 FunFam Caffeic acid O-methyltransferase 129 378 - -
Trre13g00247 378 PIRSF O-mtase 12 378 IPR016461 GO:0008168
Trre13g00247 378 Gene3D Vaccinia Virus protein VP39 128 378 IPR029063 -
Trre13g00247 378 PANTHER O-METHYLTRANSFERASE 30 358 IPR016461 GO:0008168
Trre13g00247 378 Gene3D - 6 125 IPR036388 -
Trre13g00247 378 SUPERFAMILY "Winged helix" DNA-binding domain 26 129 IPR036390 -
Trre13g00247 378 Pfam O-methyltransferase domain 151 359 IPR001077 GO:0008171
Trre13g00247 378 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 131 370 IPR029063 -
Trre13g00247 378 FunFam Caffeic acid 3-O-methyltransferase 6 125 - -
Trre13g00247 378 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 30 378 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00247 Trre-Chr13 1983028 1985517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00247 16 370 Monolignol Biosynthesis Gene Families AT5G54160 47.339 9.59e-104 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00247 - - gmx:100798295 499.975