Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00243 ATGAATTCCTATTCCAATGAAAAAGATAACCATGCAGTGGAGACTCTCAATCCACAAATAGATGATAATAATGACACCCTCTTAGCCATGGTGCTAGGTGCAAATTTAGTCTTTCCAGCAGTTCTTAATGCTGCAATTGAACTCAACTTGTTTGAAATCATTGCTAAAGAAAATTCACTAGATAATGGTGGATTCTTATCAGCTTTTGAAATTGCTTCAAAGTTACCAACTCAACACTCTGACTTGCCTAATCGGCTCGAACGGATGTTGCGCTTGCTTGCTAGCCATTCTCTTTTGTCTGTTTCGAATCGGACCAATGACGACGATGGTAGCTTGGTGAGAGTTTATGGTCTCACACCATCTGGTAAATACTTTGTCAATGATGAGAATGATACTGGCTATTTGGGTTCAATGGCATCATATTTGTCTCACCCTGCTTTTTCAGGGGTGTGGTTGAATTTCAAGGAAGCAGTTATGGATCCACAAATTGACCTATTCAAGAGTGTTCATGGAATATCTGTCTTTGAGTACTTTAAAAAAGATCCACAAATAAACAACTTATTTAACAAATCAATGACTGATACATGTACAATTCACATGAAAAGAATCCTTGAAATATACAAAGGATTTGAGGGAATATCAACACTGGTTGATGTAGGAGGTGGAAATGGACAAAGTCTTAAATCAATTATATCCAAATATCCATCAATAAAGGCAATAAACTTTGATCTCCCACAAGTCATTGATAATACACCACCCTTTCCAGGAATTGAAAATGTTGGAGGAAGTATGTTTGAAAGTGTTCCACAAGGAGATGCCATAATGCTTAAGTTTGTATGCCATAATTGGTCAGATGAAAAATGCTTAAAAATTTTAAGTAATTGTCACAAAGCTTTGCCTCCAAATGGAAAGGTCATTCTTGTGGAGTTCTTATCTCCGGAAGATTTAGGATCAACAAATGCATCTAAGATGGTTTCAATTGTTGATAACATCATGTTTATTACAGCTGGTGGTAAGGAAAGAAGTCCAAAAGAATATGAGATTTTAGGTCAAAAATCTGGATTTTCTAAACTTCAAGTTATTTGTCGTGCTTTCTCCATCCTTGGAGTGATGGAACTATACAAGTAA 1128 0.3617 MNSYSNEKDNHAVETLNPQIDDNNDTLLAMVLGANLVFPAVLNAAIELNLFEIIAKENSLDNGGFLSAFEIASKLPTQHSDLPNRLERMLRLLASHSLLSVSNRTNDDDGSLVRVYGLTPSGKYFVNDENDTGYLGSMASYLSHPAFSGVWLNFKEAVMDPQIDLFKSVHGISVFEYFKKDPQINNLFNKSMTDTCTIHMKRILEIYKGFEGISTLVDVGGGNGQSLKSIISKYPSIKAINFDLPQVIDNTPPFPGIENVGGSMFESVPQGDAIMLKFVCHNWSDEKCLKILSNCHKALPPNGKVILVEFLSPEDLGSTNASKMVSIVDNIMFITAGGKERSPKEYEILGQKSGFSKLQVICRAFSILGVMELYK 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00243 375 Pfam Dimerisation domain 41 94 IPR012967 GO:0046983
Trre13g00243 375 Pfam O-methyltransferase domain 151 356 IPR001077 GO:0008171
Trre13g00243 375 PANTHER O-METHYLTRANSFERASE 30 355 IPR016461 GO:0008168
Trre13g00243 375 PIRSF O-mtase 7 375 IPR016461 GO:0008168
Trre13g00243 375 Gene3D - 5 125 IPR036388 -
Trre13g00243 375 FunFam Caffeic acid O-methyltransferase 129 375 - -
Trre13g00243 375 FunFam Caffeic acid 3-O-methyltransferase 7 125 - -
Trre13g00243 375 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 138 372 IPR029063 -
Trre13g00243 375 Gene3D Vaccinia Virus protein VP39 127 375 IPR029063 -
Trre13g00243 375 SUPERFAMILY "Winged helix" DNA-binding domain 24 129 IPR036390 -
Trre13g00243 375 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 30 375 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00243 Trre-Chr13 1966225 1969187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00243 19 375 Monolignol Biosynthesis Gene Families AT5G54160 47.486 6.26e-111 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00243 - - gmx:100798295 521.161