Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00239 ATGTCCACCACCAACCCTTCCGACGCCGACACGGCGTCACCACCAACACGACCAACAATAACCCTTCCACCACGTCCTTCCGTCGAAGCATTTTTCGCCGGCGCCGCCAGTCCTGGACCCATGACACTAGTTTCAAGCTTCTTCGCTACCGAATCCGCCACCTTCTCTCAACTACTCGCCGGAGCTATGGCTTCTCCTCTTGCCTTCTCTTCTTCCTCCTCCGGTGACTTTATTTCCGGTAAAGATGATGATGGGTCTCATAGAAACATGGGTTTCAAACAAAGTAGACCTATGAACTTAGTCATTGCTCGTTCACCTGTTTTCACTGTTCCTCCTGGTTTGAGTCCTTCTGGTTTTCTTAACTCTCCTGGTTTCTTTTCTCCTCAGAGTCCCTTTGGAATGTCGCACCAACAGGCTTTAGCACAGGTTACAGCTCAAGCTGTCCTAGCACAATCTCATAATATGCACATGCAACCTGAATACCAGCAGGTCTCATTAGAACCTCACACCGAGCAACGCGTAGAGCAGCCGTCTTATACTCTAAGTGAAGCTTCAGAGCAACAAATGGTAGCACATGTATCAGAACCTAGAAATACTCAAATGGAAACGTCAGAGATTTCACATTCTGATAAGAAATATCAACCAGCATCTCTACCTATTGACAAACCTGCAGATGATGGCTACAATTGGCGTAAGTATGGACAGAAGCAGGTTAAGGGGAGCGAGTATCCACGGAGCTACTACAAATGCACTCATCTGAATTGTCCTGTGAAGAAAAAAGTTGAGCGTGCCCCTGATGGTCATATAACTGAAATCATCTATAAGGGCCAACATAACCACGATAAGCCTCAGGCGAATAAGCGTGCCAAAGAAAATAGCGATGTGAATGGAAATGCAAATGTTCAACCTAAGTCTGACTCAAACTCACAAGGTTGGTATGGAAATTCGAACAAAATTAGTGAAAGTGTACCTGATTCTTCGGTGCCTGAGCCTGATAATAACCCGACCTCCAATCAAGGGGCTCTTGTAACATGGCCTGGAACGAGTGAGAGTGAGGAAGTCGGTGATGCAGGCAATAAGGAAGGTGGAGATGGTGTTGAGCCAAATCCTAAGAGAAGGAGCATTGAGCCTGTGGTTCCTGAAGTACCTCCATCTCAGAAGACTGTCACAGAACCCAAAATCATTGTGCAAACAAGAAGTGAAGTTGATCTTTTGGATGATGGCTATAGGTGGAGAAAGTATGGTCAGAAAGTAGTGAAGGGAAATCCTCATCCAAGGAGTTATTACAAGTGCACTAGTGCAGGATGTAACGTGCGTAAACATGTTGAGAGAGCATCAACAGATGCAAAAGCTGTCATAACTACGTACGAGGGAAAACATAATCACGATGTCCCCGCTGCTAGAAACAGCAGCCATAACACAGCTAGTAGCAATTCAATGATATCAAAACCACAGGCTGTGATGCCAGAGAAGCACCCTTTGCTTAAAGATATGGAGTTCGGAAACAATGACCAGAGACCTGTACATTTACGCCTAAAAGAAGAGCAAATCATTGTATAA 1560 0.4538 MSTTNPSDADTASPPTRPTITLPPRPSVEAFFAGAASPGPMTLVSSFFATESATFSQLLAGAMASPLAFSSSSSGDFISGKDDDGSHRNMGFKQSRPMNLVIARSPVFTVPPGLSPSGFLNSPGFFSPQSPFGMSHQQALAQVTAQAVLAQSHNMHMQPEYQQVSLEPHTEQRVEQPSYTLSEASEQQMVAHVSEPRNTQMETSEISHSDKKYQPASLPIDKPADDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCPVKKKVERAPDGHITEIIYKGQHNHDKPQANKRAKENSDVNGNANVQPKSDSNSQGWYGNSNKISESVPDSSVPEPDNNPTSNQGALVTWPGTSESEEVGDAGNKEGGDGVEPNPKRRSIEPVVPEVPPSQKTVTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDAKAVITTYEGKHNHDVPAARNSSHNTASSNSMISKPQAVMPEKHPLLKDMEFGNNDQRPVHLRLKEEQIIV 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00239 519 SUPERFAMILY WRKY DNA-binding domain 223 283 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g00239 519 FunFam WRKY transcription factor 33 392 458 - -
Trre13g00239 519 MobiDBLite consensus disorder prediction 461 481 - -
Trre13g00239 519 MobiDBLite consensus disorder prediction 196 228 - -
Trre13g00239 519 ProSiteProfiles WRKY domain profile. 400 465 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g00239 519 MobiDBLite consensus disorder prediction 467 481 - -
Trre13g00239 519 Pfam WRKY DNA -binding domain 406 462 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g00239 519 Pfam WRKY DNA -binding domain 225 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g00239 519 SMART WRKY_cls 405 464 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g00239 519 SMART WRKY_cls 224 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g00239 519 MobiDBLite consensus disorder prediction 290 346 - -
Trre13g00239 519 MobiDBLite consensus disorder prediction 273 289 - -
Trre13g00239 519 Gene3D WRKY domain 216 284 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g00239 519 Gene3D WRKY domain 390 466 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g00239 519 ProSiteProfiles WRKY domain profile. 225 283 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g00239 519 MobiDBLite consensus disorder prediction 273 388 - -
Trre13g00239 519 MobiDBLite consensus disorder prediction 354 371 - -
Trre13g00239 519 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 121 481 IPR044810 GO:0003700
Trre13g00239 519 MobiDBLite consensus disorder prediction 1 16 - -
Trre13g00239 519 MobiDBLite consensus disorder prediction 1 25 - -
Trre13g00239 519 FunFam WRKY transcription factor 211 284 - -
Trre13g00239 519 SUPERFAMILY WRKY DNA-binding domain 397 465 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00239 Trre-Chr13 1927038 1931559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00239 6 517 WRKY Transcription Factor Family AT2G03340 51.287 9.32e-143 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre13g00239 WRKY 4.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00239 - - gmx:100796679 767.689