Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00237 ATGGGTTGCGTCAACTCCAAGAAAGCTCTAACCGGAGAAGCTGATACAGTTTCTCCGGTTGGACCTTACGTTTATTCGAGTTCTTCTCGAAAAAGGAGCAATGGTTCAGGTAGAAGCATGGTTGTGGAGACTTCTCCATCTTCTAGAGGACCTTCTGGTGTTGTTGTCAATGTCACACATCAACAACAACATCAACAACAACAACAGATTGGTGACCTGATGAAACCCGTGGAATGGAAAAAGGGAGATTTGAATGTGAAGATTGGTTTTTATCATAGGTTTGTTGAAGGTGAACAGATTGCTGCTGGTTGGCCTTCTTGGCTTACTTCCGTTGCTGGTGAAGCTATTCATGGTTTGGTCCCTCTCAAAACTGATTCTTTTGAGAAATTAGATAAGGTTGGACAAGGTACATATAGCAGTGTTTTCCAAGCACGAGAAGTCGCGACAGGGAGGATGGTTGCCTTGAAGAAGGTGCGGATGGACACACTTCAACCTGAGAGCATTAGGTTCATGGCGCGGGAGATAATAATTCTTCGCACACTGGACCACCCTAACATCATGAAGTTGGAGGGTATAATCACTTCACAACTATCAAATAGTATATACCTTGTATTTGAATACATGGAGCATGATCTTGCTGGCCTAGTATCTAACCCCGATATCAAGTTCACAGATGCACAGATTAAGTGTTACATGAGACAACTATTAAGTGGAATTGAGCACTGTCACCTACGAGGTATCATGCATCGAGACATTAAAGTATCAAATATATTAGTTAACAACGAAGGCATTCTCAAGATAGGAGACTTTGGATTAGCAAATAACGTCGGCCCGAATAGCAAGCGTCCTTTAACAAGCCGTGTGGTGACTCTATGGTATCGTCCTCCCGAGCTTTTGATGGGATCAACAAACTACGGAGTTACAGTGGATCTGTGGAGTATAGGATGTGTGTTTGCTGAACTTTTTATAGGGAAGCCTATCCTTAAGGGGAGAACCGAGGTGGAACAGTTACACAAAATTTTTAAGCTTTGCGGATCTCCTCCTGAACAATTTTGGAAAAAGAGTAAGCTTCCGCTTGCTACAATGTTTAAGCCTCAGACTAGTTACGAAAGCTCCCTTGCGGAAAGGTGTAAAGGTTATCTTCCTGCAACTGCTGCGAACCTACTTGAGACCTTACTCGCTGTTGATCCTTCCAAACGTGGTACTGCCTCATCTGCACTTATGTCCGAGTATTTCAACACCGCACCATATGCTTGTAGTCCATCACTCCTTCCAAAGTATCTACCAAGTAAAGAAATGGATGCTAAAAACCGGGATGACATGAACAGGAAAAAGAATGGCGGTAAAGTACGTGAGCGAGAGGCTGTAACATCAGGAAGGCAAAGACGGGCCCATAAAGTTATTCAGGATCCTAACAATGTCAACAAACCAGCTATGAAAGAGGAAATGCAGAATATTTCTCAAAACCCTCGTAGAGACGATGATGGTAAAGAACATCATACAAAGGGAAGAGTAGGAGCTATGCACAAAGAGCAACAAAGACACTTGTATGATGCAAAATCAGATAATGTACAAAGGATGAATGGTTACAACGGCTATAGTGTGTACTCAGGACCAGCACCAGTATCAGGATCTAGTGGCTTTACATGGGCTAAAAGAAGAAAGCCGGATGCTTCATCGGTATTATCAGATGGCTCAAGAAGCAAAATCAGTGCACTGGATCCAACCTTTGCAAAAGGCACATATGATTTAACGAAACATGGGATAGAAGTTTCAGAAAGAAAACATCATTACAATACAAGGCATCACGATGAGATTTCCAAGCATGTAGCACAAAAGCACCAGGGTCGTAATGTAGAATCGTTTGATGCAGCTGATATATACAATTCCAATTACTTCATGGATCTTGATCTCATAGAAAAATCAGATACTCAAATAAATGCACAGGATGACAAAAATTATGCCGAACCTGTGGAACAATCAGTACCAACTACGATCCAAACAAATAAAAATGATGAGCTGTCGCATTGGCATGAAAATAAAATGTGGCGGCAATCTATTCGTAAATCAAGGTTGGGAAGAGACAGACAAATGATGCAAGAATAA 2106 0.4183 MGCVNSKKALTGEADTVSPVGPYVYSSSSRKRSNGSGRSMVVETSPSSRGPSGVVVNVTHQQQHQQQQQIGDLMKPVEWKKGDLNVKIGFYHRFVEGEQIAAGWPSWLTSVAGEAIHGLVPLKTDSFEKLDKVGQGTYSSVFQAREVATGRMVALKKVRMDTLQPESIRFMAREIIILRTLDHPNIMKLEGIITSQLSNSIYLVFEYMEHDLAGLVSNPDIKFTDAQIKCYMRQLLSGIEHCHLRGIMHRDIKVSNILVNNEGILKIGDFGLANNVGPNSKRPLTSRVVTLWYRPPELLMGSTNYGVTVDLWSIGCVFAELFIGKPILKGRTEVEQLHKIFKLCGSPPEQFWKKSKLPLATMFKPQTSYESSLAERCKGYLPATAANLLETLLAVDPSKRGTASSALMSEYFNTAPYACSPSLLPKYLPSKEMDAKNRDDMNRKKNGGKVREREAVTSGRQRRAHKVIQDPNNVNKPAMKEEMQNISQNPRRDDDGKEHHTKGRVGAMHKEQQRHLYDAKSDNVQRMNGYNGYSVYSGPAPVSGSSGFTWAKRRKPDASSVLSDGSRSKISALDPTFAKGTYDLTKHGIEVSERKHHYNTRHHDEISKHVAQKHQGRNVESFDAADIYNSNYFMDLDLIEKSDTQINAQDDKNYAEPVEQSVPTTIQTNKNDELSHWHENKMWRQSIRKSRLGRDRQMMQE 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00237 701 Pfam Protein kinase domain 127 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00237 701 SMART serkin_6 127 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00237 701 FunFam probable serine/threonine-protein kinase At1g54610 114 209 - -
Trre13g00237 701 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Trre13g00237 701 MobiDBLite consensus disorder prediction 21 53 - -
Trre13g00237 701 FunFam probable serine/threonine-protein kinase At1g54610 210 452 - -
Trre13g00237 701 CDD STKc_CDK9_like 127 412 - -
Trre13g00237 701 ProSiteProfiles Protein kinase domain profile. 127 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00237 701 Gene3D Transferase(Phosphotransferase) domain 1 210 451 - -
Trre13g00237 701 SUPERFAMILY Protein kinase-like (PK-like) 121 417 IPR011009 -
Trre13g00237 701 MobiDBLite consensus disorder prediction 476 513 - -
Trre13g00237 701 Gene3D Phosphorylase Kinase; domain 1 118 209 - -
Trre13g00237 701 ProSitePatterns Protein kinases ATP-binding region signature. 133 156 IPR017441 GO:0005524
Trre13g00237 701 MobiDBLite consensus disorder prediction 431 464 - -
Trre13g00237 701 PANTHER CELL DIVISION PROTEIN KINASE 125 416 - -
Trre13g00237 701 MobiDBLite consensus disorder prediction 486 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00237 Trre-Chr13 1910691 1915517 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00237 124 453 Core Cell Cycle Gene Families AT5G10270 46.243 1.47e-102 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trre13g00237 Pkinase 3.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00237 - - lja:Lj1g3v2982400.1 971.844