Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre13g00237 | ATGGGTTGCGTCAACTCCAAGAAAGCTCTAACCGGAGAAGCTGATACAGTTTCTCCGGTTGGACCTTACGTTTATTCGAGTTCTTCTCGAAAAAGGAGCAATGGTTCAGGTAGAAGCATGGTTGTGGAGACTTCTCCATCTTCTAGAGGACCTTCTGGTGTTGTTGTCAATGTCACACATCAACAACAACATCAACAACAACAACAGATTGGTGACCTGATGAAACCCGTGGAATGGAAAAAGGGAGATTTGAATGTGAAGATTGGTTTTTATCATAGGTTTGTTGAAGGTGAACAGATTGCTGCTGGTTGGCCTTCTTGGCTTACTTCCGTTGCTGGTGAAGCTATTCATGGTTTGGTCCCTCTCAAAACTGATTCTTTTGAGAAATTAGATAAGGTTGGACAAGGTACATATAGCAGTGTTTTCCAAGCACGAGAAGTCGCGACAGGGAGGATGGTTGCCTTGAAGAAGGTGCGGATGGACACACTTCAACCTGAGAGCATTAGGTTCATGGCGCGGGAGATAATAATTCTTCGCACACTGGACCACCCTAACATCATGAAGTTGGAGGGTATAATCACTTCACAACTATCAAATAGTATATACCTTGTATTTGAATACATGGAGCATGATCTTGCTGGCCTAGTATCTAACCCCGATATCAAGTTCACAGATGCACAGATTAAGTGTTACATGAGACAACTATTAAGTGGAATTGAGCACTGTCACCTACGAGGTATCATGCATCGAGACATTAAAGTATCAAATATATTAGTTAACAACGAAGGCATTCTCAAGATAGGAGACTTTGGATTAGCAAATAACGTCGGCCCGAATAGCAAGCGTCCTTTAACAAGCCGTGTGGTGACTCTATGGTATCGTCCTCCCGAGCTTTTGATGGGATCAACAAACTACGGAGTTACAGTGGATCTGTGGAGTATAGGATGTGTGTTTGCTGAACTTTTTATAGGGAAGCCTATCCTTAAGGGGAGAACCGAGGTGGAACAGTTACACAAAATTTTTAAGCTTTGCGGATCTCCTCCTGAACAATTTTGGAAAAAGAGTAAGCTTCCGCTTGCTACAATGTTTAAGCCTCAGACTAGTTACGAAAGCTCCCTTGCGGAAAGGTGTAAAGGTTATCTTCCTGCAACTGCTGCGAACCTACTTGAGACCTTACTCGCTGTTGATCCTTCCAAACGTGGTACTGCCTCATCTGCACTTATGTCCGAGTATTTCAACACCGCACCATATGCTTGTAGTCCATCACTCCTTCCAAAGTATCTACCAAGTAAAGAAATGGATGCTAAAAACCGGGATGACATGAACAGGAAAAAGAATGGCGGTAAAGTACGTGAGCGAGAGGCTGTAACATCAGGAAGGCAAAGACGGGCCCATAAAGTTATTCAGGATCCTAACAATGTCAACAAACCAGCTATGAAAGAGGAAATGCAGAATATTTCTCAAAACCCTCGTAGAGACGATGATGGTAAAGAACATCATACAAAGGGAAGAGTAGGAGCTATGCACAAAGAGCAACAAAGACACTTGTATGATGCAAAATCAGATAATGTACAAAGGATGAATGGTTACAACGGCTATAGTGTGTACTCAGGACCAGCACCAGTATCAGGATCTAGTGGCTTTACATGGGCTAAAAGAAGAAAGCCGGATGCTTCATCGGTATTATCAGATGGCTCAAGAAGCAAAATCAGTGCACTGGATCCAACCTTTGCAAAAGGCACATATGATTTAACGAAACATGGGATAGAAGTTTCAGAAAGAAAACATCATTACAATACAAGGCATCACGATGAGATTTCCAAGCATGTAGCACAAAAGCACCAGGGTCGTAATGTAGAATCGTTTGATGCAGCTGATATATACAATTCCAATTACTTCATGGATCTTGATCTCATAGAAAAATCAGATACTCAAATAAATGCACAGGATGACAAAAATTATGCCGAACCTGTGGAACAATCAGTACCAACTACGATCCAAACAAATAAAAATGATGAGCTGTCGCATTGGCATGAAAATAAAATGTGGCGGCAATCTATTCGTAAATCAAGGTTGGGAAGAGACAGACAAATGATGCAAGAATAA | 2106 | 0.4183 | MGCVNSKKALTGEADTVSPVGPYVYSSSSRKRSNGSGRSMVVETSPSSRGPSGVVVNVTHQQQHQQQQQIGDLMKPVEWKKGDLNVKIGFYHRFVEGEQIAAGWPSWLTSVAGEAIHGLVPLKTDSFEKLDKVGQGTYSSVFQAREVATGRMVALKKVRMDTLQPESIRFMAREIIILRTLDHPNIMKLEGIITSQLSNSIYLVFEYMEHDLAGLVSNPDIKFTDAQIKCYMRQLLSGIEHCHLRGIMHRDIKVSNILVNNEGILKIGDFGLANNVGPNSKRPLTSRVVTLWYRPPELLMGSTNYGVTVDLWSIGCVFAELFIGKPILKGRTEVEQLHKIFKLCGSPPEQFWKKSKLPLATMFKPQTSYESSLAERCKGYLPATAANLLETLLAVDPSKRGTASSALMSEYFNTAPYACSPSLLPKYLPSKEMDAKNRDDMNRKKNGGKVREREAVTSGRQRRAHKVIQDPNNVNKPAMKEEMQNISQNPRRDDDGKEHHTKGRVGAMHKEQQRHLYDAKSDNVQRMNGYNGYSVYSGPAPVSGSSGFTWAKRRKPDASSVLSDGSRSKISALDPTFAKGTYDLTKHGIEVSERKHHYNTRHHDEISKHVAQKHQGRNVESFDAADIYNSNYFMDLDLIEKSDTQINAQDDKNYAEPVEQSVPTTIQTNKNDELSHWHENKMWRQSIRKSRLGRDRQMMQE | 701 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre13g00237 | 701 | Pfam | Protein kinase domain | 127 | 412 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre13g00237 | 701 | SMART | serkin_6 | 127 | 412 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre13g00237 | 701 | FunFam | probable serine/threonine-protein kinase At1g54610 | 114 | 209 | - | - | |
Trre13g00237 | 701 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 247 | 259 | IPR008271 | GO:0004672|GO:0006468 | |
Trre13g00237 | 701 | MobiDBLite | consensus disorder prediction | 21 | 53 | - | - | |
Trre13g00237 | 701 | FunFam | probable serine/threonine-protein kinase At1g54610 | 210 | 452 | - | - | |
Trre13g00237 | 701 | CDD | STKc_CDK9_like | 127 | 412 | - | - | |
Trre13g00237 | 701 | ProSiteProfiles | Protein kinase domain profile. | 127 | 412 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre13g00237 | 701 | Gene3D | Transferase(Phosphotransferase) domain 1 | 210 | 451 | - | - | |
Trre13g00237 | 701 | SUPERFAMILY | Protein kinase-like (PK-like) | 121 | 417 | IPR011009 | - | |
Trre13g00237 | 701 | MobiDBLite | consensus disorder prediction | 476 | 513 | - | - | |
Trre13g00237 | 701 | Gene3D | Phosphorylase Kinase; domain 1 | 118 | 209 | - | - | |
Trre13g00237 | 701 | ProSitePatterns | Protein kinases ATP-binding region signature. | 133 | 156 | IPR017441 | GO:0005524 | |
Trre13g00237 | 701 | MobiDBLite | consensus disorder prediction | 431 | 464 | - | - | |
Trre13g00237 | 701 | PANTHER | CELL DIVISION PROTEIN KINASE | 125 | 416 | - | - | |
Trre13g00237 | 701 | MobiDBLite | consensus disorder prediction | 486 | 513 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre13g00237 | Trre-Chr13 | 1910691 | 1915517 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre13g00237 | 124 | 453 | Core Cell Cycle Gene Families | AT5G10270 | 46.243 | 1.47e-102 | 321 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | CMGC_CDK-CRK7-CDK9 | Trre13g00237 | Pkinase | 3.4e-68 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre13g00237 | - | - | lja:Lj1g3v2982400.1 | 971.844 |