Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00233 ATGAATGGACTAGCTGAGCAAGGTGGTGGTTCAAGTATACACCCTTTACTGCCACATTATAAATTGGGAAAAAAAATTGGTATTGGTTCCTTTGGCAAGGTGAAAATTGCTGAACATGTACTAACTCATCATAAGGTTGCCATCAAGATCCTTAAGCGTCACGAGATAAAGGACTGGAAAATGGAAGAAAAAGTCAGAAGAGAAATAAAAATATTAAGACTGTTCATGCATCCTCACATCATACGGCTGTATGAGGTGATAGAGACTGAAACTAAAATATATGTTGTCACGGAGTATGTGGAACGTGGGGAACTATTTGATTATATTGTACAAAAGAGCAGGTTACAAGAAGACGAAGCTCGCAATATTTTTCAGCAGATAATATCTGGTGTGGAGTACTGTCACAGAAATATGGTTGTTCATAGGGATCTGAAGCCTGAGAATTTGCTATTGGACTCTAACTACAATGTAAAAATCGCTGATTTTGGTTTAAGCAACATAATGCGTGATGGACACTTTCTTAAGACAAGTTGTGGCAGCCCCAACTATGCAGCTCCTGAGGTCATCTCTGGGAGATTGTATGCTGGACCTGAAGTAGATGTCTGGAGCTGTGGTGTTATTCTATATGCTCTTCTTTGTGGAACTCTTCCTTTTGATGATGAAAGCTTTCCAAATCTCTTCATGAAAATTAAGGGAGGAATATACACTCTTCCTAGTCATCTGTCACCGGGTGCTAGAGATTTGATACCAAGGATGCTGGTAGGTGACCCTATGAAGAGGATTACCATACCTGAGATCCGTCAACATGCATGGTTCCAACTCGGACTTCCACGTTATTTAGCTGTGCCACCGCCCGATACAATGCAACAGGCTAAGAAGATTGATGAGGAAATCCTTCAGGAAGTGGTAAATATGGGATTTGACAGGAATCAATTGATTGAATCTCTTCGCCACCGGATACAGAATCAGGGTACCGTGACATACTATTTAATATTAGACAACCGAATCCGTGTTTCCAGCAGCTATCTTGGAGCTGAGTATCAAGAGTCCATGGACTCTAGCTTTATCCAAATGCATCCCAATGAAGTTGCTGGACATCGCATTCCAGGCTATATGGATTATCCAAGAGCTGGATTGAGACCACAGCTCCCTGTTGAAAGAAAATGGGCTCTTGGGCTTACGTCTAAAGATCATCCTCGTGAAATAATGACTGGGGTCCTAATAGCTCTCCAAAAATTAAATGTTTGTTGGAAGAAGATTGGGCACTACAACATGAAGTGCAGGTGGGATGCTGGTATTCTCGGTCATCAAGAAGGAACGATGAACAATGCTGCACATAATAATCATTACTTCAGTGATGATTCCGGCATTATTGAGAATGTGGCTGTCAAATTTGAACTGCAGCTTTACAAAACTCGGGAAGAGAAGTATCTTCTTGATCTTCAAAGGGTGCATGGTTCAGAGTTTCTTTTCTTGGATCTTTGTGCGGCTTTCCTTTCGCAGCTTCGTGTCCTCTAG 1518 0.415 MNGLAEQGGGSSIHPLLPHYKLGKKIGIGSFGKVKIAEHVLTHHKVAIKILKRHEIKDWKMEEKVRREIKILRLFMHPHIIRLYEVIETETKIYVVTEYVERGELFDYIVQKSRLQEDEARNIFQQIISGVEYCHRNMVVHRDLKPENLLLDSNYNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGRLYAGPEVDVWSCGVILYALLCGTLPFDDESFPNLFMKIKGGIYTLPSHLSPGARDLIPRMLVGDPMKRITIPEIRQHAWFQLGLPRYLAVPPPDTMQQAKKIDEEILQEVVNMGFDRNQLIESLRHRIQNQGTVTYYLILDNRIRVSSSYLGAEYQESMDSSFIQMHPNEVAGHRIPGYMDYPRAGLRPQLPVERKWALGLTSKDHPREIMTGVLIALQKLNVCWKKIGHYNMKCRWDAGILGHQEGTMNNAAHNNHYFSDDSGIIENVAVKFELQLYKTREEKYLLDLQRVHGSEFLFLDLCAAFLSQLRVL 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00233 505 PANTHER SERINE/THREONINE KINASE 19 337 - -
Trre13g00233 505 FunFam Non-specific serine/threonine protein kinase 12 338 - -
Trre13g00233 505 ProSiteProfiles Protein kinase domain profile. 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00233 505 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 293 333 IPR015940 -
Trre13g00233 505 FunFam Non-specific serine/threonine protein kinase 392 503 - -
Trre13g00233 505 Pfam Protein kinase domain 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00233 505 Pfam Kinase associated domain 1 463 504 IPR001772 -
Trre13g00233 505 SUPERFAMILY KA1-like 329 504 IPR028375 -
Trre13g00233 505 CDD UBA_SnRK1_plant 294 334 - -
Trre13g00233 505 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Trre13g00233 505 Gene3D Kinase associated domain 1, KA1 392 503 - -
Trre13g00233 505 CDD STKc_AMPK_alpha 17 272 - -
Trre13g00233 505 SUPERFAMILY Protein kinase-like (PK-like) 17 273 IPR011009 -
Trre13g00233 505 FunFam Non-specific serine/threonine protein kinase 7 101 - -
Trre13g00233 505 Gene3D Transferase(Phosphotransferase) domain 1 11 355 - -
Trre13g00233 505 Pfam UBA/TS-N domain 294 330 IPR015940 -
Trre13g00233 505 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Trre13g00233 505 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 456 504 IPR001772 -
Trre13g00233 505 SUPERFAMILY UBA-like 282 331 IPR009060 GO:0005515
Trre13g00233 505 CDD AMPKA_C 386 502 - -
Trre13g00233 505 SMART serkin_6 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00233 505 SMART uba_6 295 332 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00233 Trre-Chr13 1882349 1887014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00233 20 272 CBL-interacting serine-threonine protein kinases AT4G24400 52.756 3.55e-90 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Trre13g00233 Pkinase 3.3e-79 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00233 K07198 - gmx:547544 833.172