Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00226 ATGACAAGGAAGAGAAATGTTTCTGAAACACTAGTTGAAGACATTAGTCCTCATGAAACAATCAATGAATGGAATGAGGTAATGAAGGAATCTAGTACACAAGGAACTAAAAACAAAAAGAGATTTGTTGGTGTGAGACAAAGACCTTCAGGAAGATGGGTAGCTGAGATAAAAGATACCATTCAAAAGATAAGAGTTTGGTTAGGAACATATGATACAGCTGAAAAAGCTGCAAGAGCCTATGATGAAGCTGCATGTATACTTCGTGGTTCCAACACTAGAACAAATTTCTTACCTTCTTCTAAATCTTCCTCTAGTACTCATGTTCTTCCTTCAAAAATCACCAATCTCCTCCTTCAAAGACTTAAAGCAAGGACTTATCCTTGCCATAGCGATCACAACTGCGAATCTTTATATTGCGGTAAAATGAAGGAAAATGCCGCCGATACACTTGTGGTGCCATTGCTGAGGCCTAACAATTCTTTATATTGTGGCCGCTATGAACCTTTCATTTGGGATAAAATGTGGGAAAATGAGGCCGATGCTGTCGAAAGTAGTGAAGTTGCAATGTCATTGCAGAGACCTCAAAATCCTTTATATTACGATTTCTTTGATGGCCTTGAAGAAGATTATAACACAAATAGCAACATTGAATTTTATAATAGTAGTAGTAATGCACAAATTGATGACATTACAAGTTGTTTTGAATCATGTTTAACTGAAAAAGATGAATGTATGATGACACAAACTACATCAAGTGGTGAAAAAGAGGAAGACATTGAAGAAAACATTGATTTGAGTTTCCAACAACATTTTCATTTCCTTGACAATGTTAATGATGTTGCAATGAACTATTATTCTCCTTTTGATATTGAGGAGCATGTGGAGTTAGAGATGAATGATGATGATGAGTCTTCAATGCTAAGAAATGCTATGAAGAGAATGAAATATGAGAGGAAAATTTCAGCTTCTTTATATGCATTCAATGGAATACCTGAATGCTTGAAGTTGAAACTTGAATCAGAAAACAAAGCAATAGAGTTTTCTAATGAACTAACCAACCTTAAAAAGGCTTGTAACAAAAACAAAATTGATGCTTAG 1101 0.3488 MTRKRNVSETLVEDISPHETINEWNEVMKESSTQGTKNKKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTYDTAEKAARAYDEAACILRGSNTRTNFLPSSKSSSSTHVLPSKITNLLLQRLKARTYPCHSDHNCESLYCGKMKENAADTLVVPLLRPNNSLYCGRYEPFIWDKMWENEADAVESSEVAMSLQRPQNPLYYDFFDGLEEDYNTNSNIEFYNSSSNAQIDDITSCFESCLTEKDECMMTQTTSSGEKEEDIEENIDLSFQQHFHFLDNVNDVAMNYYSPFDIEEHVELEMNDDDESSMLRNAMKRMKYERKISASLYAFNGIPECLKLKLESENKAIEFSNELTNLKKACNKNKIDA 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00226 366 Gene3D AP2/ERF domain 40 98 IPR036955 GO:0003700|GO:0006355
Trre13g00226 366 Pfam AP2 domain 41 90 IPR001471 GO:0003700|GO:0006355
Trre13g00226 366 FunFam ethylene-responsive transcription factor RAP2-11 40 99 - -
Trre13g00226 366 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
Trre13g00226 366 SUPERFAMILY DNA-binding domain 41 98 IPR016177 GO:0003677
Trre13g00226 366 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Trre13g00226 366 CDD AP2 40 97 IPR001471 GO:0003700|GO:0006355
Trre13g00226 366 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Trre13g00226 366 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700|GO:0006355
Trre13g00226 366 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 31 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00226 Trre-Chr13 1808975 1811710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00226 38 118 AP2-EREBP Transcription Factor Family AT5G19790 71.605 7.63e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre13g00226 AP2 2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00226 K09286 - gmx:100796159 305.064