Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00210 ATGCAACATTCATCAAGTCATGTGGTAGAATCATCAAGTTTGAGAAAAGGGGCATGGACTAAATTAGAAGATGATCTTCTCAAAGATTGTATTCAACGTTATGGGGTGGGAAAATGGCACTTAATTCCTCAAAGAGCAGGATTGAAGAGATGCCGCAAGAGTTGTAGATTGAGATGGTTGAACTATCTAAACCCAAATATCAAGAGGGGAGAATTTAGTCAAGATGAAGTTGATTTGATGATCAAATTGCACAAACTTTTAGGAAACAGATGGTCATTAATTGCTGGAAGACTTCCGGGAAGAACTTCAAATGATGTGAAAAATTATTGGAACACAAACATGCGTAGCAAAAAAGAGAAGAACATAATGAAGGAAAAAATAGAAACAATGAAACCACATGAAGTGATAAAGCCTCAACCACGAACTTTTTCAAAACCAATGTTGGAAGTGAATAAATTCATTGCATCAAATGATCATAGTTGTTCCAAAGTTAATATGAATGAAGAATTAGGTGCAACTTCATCAGGAACATGCAATTGGTGGAAAACTTTGTTATTAGATGATGACAATGACAATGAAGATCATAACAATCACTTATGTGGAATGGACTTTTGGAATGATCAAGAGCTTAATTCAATACCAAATTCTCTTGACTTTCTTATTGAAAGTCAATCTTGGAGTGATTTTCTTGCTCAAATTTGA 702 0.3433 MQHSSSHVVESSSLRKGAWTKLEDDLLKDCIQRYGVGKWHLIPQRAGLKRCRKSCRLRWLNYLNPNIKRGEFSQDEVDLMIKLHKLLGNRWSLIAGRLPGRTSNDVKNYWNTNMRSKKEKNIMKEKIETMKPHEVIKPQPRTFSKPMLEVNKFIASNDHSCSKVNMNEELGATSSGTCNWWKTLLLDDDNDNEDHNNHLCGMDFWNDQELNSIPNSLDFLIESQSWSDFLAQI 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00210 233 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Trre13g00210 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Trre13g00210 233 SMART sant 68 116 IPR001005 -
Trre13g00210 233 SMART sant 15 65 IPR001005 -
Trre13g00210 233 Gene3D - 16 68 - -
Trre13g00210 233 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Trre13g00210 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Trre13g00210 233 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Trre13g00210 233 CDD SANT 71 114 IPR001005 -
Trre13g00210 233 Gene3D - 71 138 - -
Trre13g00210 233 CDD SANT 18 63 IPR001005 -
Trre13g00210 233 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Trre13g00210 233 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Trre13g00210 233 FunFam Myb transcription factor 16 68 - -
Trre13g00210 233 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 7 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00210 Trre-Chr13 1724175 1725508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00210 13 188 MYB Transcription Factor Family AT1G66370 47.573 3.98e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre13g00210 Myb_DNA-binding 4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00210 - K16166 gmx:100780023 254.603