Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00208 ATGGGAAGATCACCATGTTGTGAAAAAGTTGGTTTGAAAAAAGGACCATGGACACCTGAGGAAGATCAAAAGCTCTTATCTTACATTGAAGAACATGGTCATGGAAGTTGGCGTGCTCTCCCTACAAAAGCTGGACTTGAGAGATGTGGCAAGAGTTGTAGATTGAGATGGACTAATTATTTAAGGCCTGATATTAAGAGAGGAAAGTTTACTTCACAAGAAGAACAAACCATTATTCAACTTCATGCACTATTAGGCAACAGGTGGTCAGCAATAGCCACACATTTACCTAAGAGAACAGATAATGAAATCAAGAACTATTGGAACACACATCTTAAAAAAAGGTTAACAAAAATGGGAATTGATCCTATTACACATAAACCAAAAAATGAAACCCTTTCCTCTGATAATCATTCTAAGAATTCTGCAAATCTTAGTCACATGGCTCAATGGGAAAGTGCAAGACTTGAAGCTGAAGCAAGATTGGTTAGAGAATCAAAGCTACGTTCACAATATTCATTGCAAATTGGAAGTAATAATTCTATTTTTCCATCACAATCTTCATCAAGTGCATCATCATCTTCAAATCAAGTACTTAATATTAAAGAAGAAGGTGAAAAAGAGTGGAAAGGTTATGAAGATTCCACACATTTGTTAGAATTCAAAGAAGTGATGGAGAATTCATCAATAGCTTTTACTTCTACAATGACTAGTGTTGCTGAGGACGGTTTCACTAATCTCTTGCTCGATAATTCTAACTCCGGTGATCCGAGTTTGTCACCGGAGAGCGGTGGAGAGTGTAATACTTGTGATGCAAGTGGTAGTGGCGGTGATGGAAGTGGAAGTGATTTTTACGAAGACAACAAGAACTATTGGAACAACATTCTTAATTTAGTTAACTCTTCACCTTCTAATTCACCGATGTTCTAA 930 0.3677 MGRSPCCEKVGLKKGPWTPEEDQKLLSYIEEHGHGSWRALPTKAGLERCGKSCRLRWTNYLRPDIKRGKFTSQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPITHKPKNETLSSDNHSKNSANLSHMAQWESARLEAEARLVRESKLRSQYSLQIGSNNSIFPSQSSSSASSSSNQVLNIKEEGEKEWKGYEDSTHLLEFKEVMENSSIAFTSTMTSVAEDGFTNLLLDNSNSGDPSLSPESGGECNTCDASGSGGDGSGSDFYEDNKNYWNNILNLVNSSPSNSPMF 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00208 309 Gene3D - 13 66 - -
Trre13g00208 309 CDD SANT 69 112 IPR001005 -
Trre13g00208 309 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Trre13g00208 309 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre13g00208 309 CDD SANT 16 61 IPR001005 -
Trre13g00208 309 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre13g00208 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre13g00208 309 Gene3D - 69 147 - -
Trre13g00208 309 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre13g00208 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre13g00208 309 SMART sant 66 114 IPR001005 -
Trre13g00208 309 SMART sant 13 63 IPR001005 -
Trre13g00208 309 MobiDBLite consensus disorder prediction 251 276 - -
Trre13g00208 309 FunFam MYB-related transcription factor 13 66 - -
Trre13g00208 309 MobiDBLite consensus disorder prediction 122 142 - -
Trre13g00208 309 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 230 - -
Trre13g00208 309 FunFam MYB transcription factor 68 129 - -
Trre13g00208 309 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre13g00208 309 MobiDBLite consensus disorder prediction 251 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00208 Trre-Chr13 1702804 1705188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00208 1 309 MYB Transcription Factor Family AT3G01140 55.742 4.30e-121 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre13g00208 Myb_DNA-binding 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00208 K09422 - fve:101311397 373.244