Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00206 ATGGATGATGAAAAGTTCCAACTTCCAGTTGGTTTTCGATTCCATCCGACTGATGAAGAGCTCATAAATCAATACCTTCTCAAGAAGGTTATTGACGATAGCTTCTGTGCTATAGCTATCGCAGAAATTGATATGAATAAGTGTGAACCATGGGATCTGGCTGAGTTAGCTAAAATGGGAGAAACAGAATGGTATTTTTTCTGTGTGAGGGACAAAAAATACCCAACTGGACAAAGGACAAACAGGGCTACTAATGCTGGTTACTGGAAGGCCACTGGCAAAGACAAAGAGATTTACAAGGGAAATAGCTTAATTGGGATGAAGAAAACACTGGTTTTCTACAAAGGAAGAGCTCCAAGAGGTGAAAAAACCAATTGGGTCATGCATGAATACAGACTGGAGGGTAGTAACAAAATTTCTGAGCACAATCTCTCCGAACAAGGATCGGGTGAATGGGTTATATCTAGAGTCTATGAGAAGGGAAATTTTGGAAGGAAAATGCATGGTAATTCAAAACTTGTAAGGTTTAACTCTTCTAGAGAAGGACCATCAAATGCTAATGAATCTCTATTGCCTCCATTGATGGATTCTTCTCCATACAATAATGAAACAAAAACTAATTTTGGTGGTGATTTCTCTCAGCATGTCCTCAATTCCTTCTCCATGAAAAATGATGAAACTATGAACATTTCATCCTCTTCCAAACAATTTGGTGCTGAATTAGCAACACAAAACTGTTTCTTGTCTCAACAAGAATCCATGTTGAGGATGCAAATGGAGAATAATGAGAATATTGGAACAAGTTCAAAACAAATTGTGAAACAAGACTTTTCTTTTGATGGTGATATTTCATCTGTGGTTTATGGAAATAACATGTTTCAAAGGTGGTATGGGAATCAAGAATTTGCTCCAGCTTCTTCTACTGATCAGCCTGTGGTCACTGATTGCTTGTGGAATTATTGA 963 0.3769 MDDEKFQLPVGFRFHPTDEELINQYLLKKVIDDSFCAIAIAEIDMNKCEPWDLAELAKMGETEWYFFCVRDKKYPTGQRTNRATNAGYWKATGKDKEIYKGNSLIGMKKTLVFYKGRAPRGEKTNWVMHEYRLEGSNKISEHNLSEQGSGEWVISRVYEKGNFGRKMHGNSKLVRFNSSREGPSNANESLLPPLMDSSPYNNETKTNFGGDFSQHVLNSFSMKNDETMNISSSSKQFGAELATQNCFLSQQESMLRMQMENNENIGTSSKQIVKQDFSFDGDISSVVYGNNMFQRWYGNQEFAPASSTDQPVVTDCLWNY 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00206 320 MobiDBLite consensus disorder prediction 176 195 - -
Trre13g00206 320 FunFam NAC domain-containing protein 100-like 17 164 - -
Trre13g00206 320 ProSiteProfiles NAC domain profile. 8 160 IPR003441 GO:0003677|GO:0006355
Trre13g00206 320 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 256 - -
Trre13g00206 320 SUPERFAMILY NAC domain 6 160 IPR036093 GO:0003677|GO:0006355
Trre13g00206 320 Gene3D NAC domain 17 164 IPR036093 GO:0003677|GO:0006355
Trre13g00206 320 Pfam No apical meristem (NAM) protein 9 133 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00206 Trre-Chr13 1679026 1681065 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00206 8 320 NAC Transcription Factor Family AT5G07680 49.408 7.21e-97 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre13g00206 NAM 9.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00206 - - cam:101488836 416.001