Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00205 ATGAGATCATATGAAAATGTTTTCAAACACATAATGGATGATGAAAAGTTCCAACTTCCAGTTGGTTTTCGATTCCATCCGACTGATGAAGAGCTCATAAATCAATACCTTCTCAAGAAGGTTATTGACGATAGCTTCTGTGCTATAGCTATCGCAGAAATTGATATGAATAAGTGTGAACCATGGGATCTGGCTGAGTTAGCTAAAATGGGAGAAACAGAATGGTATTTTTTCTGTGTGAGGGACAAAAAATACCCAACTGGACAAAGGACAAACAGGGCTACTAATGCTGGTTACTGGAAGGCCACTGGCAAAGACAAAGAGATTTACAAGGGAAATAGCTTAATTGGGATGAAGAAAACACTGGTTTTCTACAAAGGAAGAGCTCCAAGAGGTGAAAAAACCAATTGGGTCATGCATGAATACAGACTGGAGGGTAGTAACAAAATTTCTGAGCACAATCTCTCCGAACAAGGATCGGGTGAATGGGTTATATCTAGAGTCTATGAGAAGGGAAATTTTGGAAGGAAAATGCATGGTAATTCAAAACTTGTAAGGTTTAACTCTTCTAGAGAAGGACCATCAAATGCTAATGAATCTCTATTGCCTCCATTGATGGATTCTTCTCCATACAATAATGAAACAAAAACTAATTTTGGTGGTGATTTCTCTCAGCATGTCCTCAATTCCTTCTCCATGAAAAATGATGAAACTATGAACATTTCATCCTCTTCCAAACAATTTGGTGCTGAATTAGCAACACAAAACTGTTTCTTGTCTCAACAAGAATCCATGTTGAGGATGCAAATGGAGAATAATGAGAATATTGGAACAAGTTCAAAACAAATTGTGAAACAAGACTTTTCTTTTGATGGTGATATTTCATCTGTGGTTTATGGAAATAACATGTTTCAAAGGTGGTATGGGAATCAAGAATTTGCTCCAGCTTCTTCTACTGATCAGCCTGTGGTCACTGATTGCTTGTGGAATTATTGA 996 0.3725 MRSYENVFKHIMDDEKFQLPVGFRFHPTDEELINQYLLKKVIDDSFCAIAIAEIDMNKCEPWDLAELAKMGETEWYFFCVRDKKYPTGQRTNRATNAGYWKATGKDKEIYKGNSLIGMKKTLVFYKGRAPRGEKTNWVMHEYRLEGSNKISEHNLSEQGSGEWVISRVYEKGNFGRKMHGNSKLVRFNSSREGPSNANESLLPPLMDSSPYNNETKTNFGGDFSQHVLNSFSMKNDETMNISSSSKQFGAELATQNCFLSQQESMLRMQMENNENIGTSSKQIVKQDFSFDGDISSVVYGNNMFQRWYGNQEFAPASSTDQPVVTDCLWNY 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00205 331 Pfam No apical meristem (NAM) protein 20 144 IPR003441 GO:0003677|GO:0006355
Trre13g00205 331 ProSiteProfiles NAC domain profile. 19 171 IPR003441 GO:0003677|GO:0006355
Trre13g00205 331 FunFam NAC domain-containing protein 100-like 28 175 - -
Trre13g00205 331 MobiDBLite consensus disorder prediction 187 206 - -
Trre13g00205 331 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 266 - -
Trre13g00205 331 Gene3D NAC domain 28 175 IPR036093 GO:0003677|GO:0006355
Trre13g00205 331 SUPERFAMILY NAC domain 16 171 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00205 Trre-Chr13 1678993 1681065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00205 19 331 NAC Transcription Factor Family AT5G07680 49.408 1.03e-96 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre13g00205 NAM 1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00205 - - cam:101488836 420.624