Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00201 ATGGTGTCATTTCTTCAGATACTTCTAGCTTTTCCTCTATTGATATTTTTCCTTTTCATAAAATACAAAACCATTATTAAGAACTCATCAACCCTTCCAAAAGGTCCAAAAGGCCTACCAATAATTGGCAATCTCCATCAACTTGATAGTTCAAAACTTCATGTTCAACTTTGGAAACTCTCAAAAATCTATGGTCCTCTTTTCTCTCTTAAAATTGGTTTCAAAAAAGCAATTGTTGTTTCATCACCTAAACTAGCTAAAGAAATTCTCAAAGATCATGACCATGATGTTTGTAGTAGGCAACCTTCATACGGTACACAAAAATTGTCTTACAATGGCTTAGATATGATATTTTCACCATACAATGATTGTTGGAGAGAAATAAGAAAAATTTGTGTTGTCCATTTTTTTAGCTCCAAAAAAATTTCTAGCTTTTCACATGTGAGAAAATTTGAGGTCAAGCAAATGATAAAAAGAATTTCTAAGCATGGTGATTCGTCCAAAATTTCAAACCTTAGTGAGATCTTAATGTCTGTCTCAAGCTCTATAGTTTGTAGAATTGCTTTTGGAAAAAGTTATGAAAATGAAGGGGGTGAGAAAAGTAGGTTCCATGGTTTACTTAATGAGACACAAGCTATTTTTCTTTCTTTTTTTGTTTCGGATTATATTCCTTTCATAGGGTGGGTTGATAAACTCACAGGGTTAGTTGATCGTGTTGATAATACTTTTAAAGCTTTGGATGGGTTTTTTGAAGAAGTTCTTAAGGAACATCTTAATCCTATTAATAGGAAGAAAGAAGAACAAGAGAAGGATATAGTTGATGTGTTACTTGAGTTAAAAAAGAAGGGTCGTCTCTCAATTGATATTACCAATGATCACATCAAAGCAGTTATTATGAACCTACTTGTAGCAGCTACAGACACAAGTGCAGCCACATCAGTTTGGGTGATGACTGGACTAATGAAGAATCCAAGAGCAATGAAGAAAGCTCAGGTAGAAGTTAGAAACCTCTATGGCAACAAAGAGTTCATAGATGAAGATGATATTCAAAACCTTGTGTATCTTAAGGCCGTGATAAAAGAGACATTAAGACTCTATGCACCAGCACCAATGGTACCAAGAGAAACCAATCAAGGTTTCATTCTAAGTGGTTATAAAATAGAGCCAAAAACTTTAGTATATGTGAACGTTTGGGCTATTCATAGGGATCCTGAGACATGGAATGATCCAGAAGAGTTTTATCCCGAGAGATTTTTAAACAATGATATAGATTTTAAAGGACAAGATTTTGAATTGATTCCGTTTGGTGCAGGGCGTAGAATTTGCCCTGGCATACCACTAGGAATTGCTACAGTGGAAATGATAACTGCAAATCTTCTCAATTCATTTGATTGGAAAATGCCTGAAGGGATGACAAAAGAAGATATAGACACTGAAGGACTACCAGGACTTGCTAGTCACAAGAAGAATCATCTTTGCCTGGTTGCCAAAAATTGCTTTTGA 1503 0.3486 MVSFLQILLAFPLLIFFLFIKYKTIIKNSSTLPKGPKGLPIIGNLHQLDSSKLHVQLWKLSKIYGPLFSLKIGFKKAIVVSSPKLAKEILKDHDHDVCSRQPSYGTQKLSYNGLDMIFSPYNDCWREIRKICVVHFFSSKKISSFSHVRKFEVKQMIKRISKHGDSSKISNLSEILMSVSSSIVCRIAFGKSYENEGGEKSRFHGLLNETQAIFLSFFVSDYIPFIGWVDKLTGLVDRVDNTFKALDGFFEEVLKEHLNPINRKKEEQEKDIVDVLLELKKKGRLSIDITNDHIKAVIMNLLVAATDTSAATSVWVMTGLMKNPRAMKKAQVEVRNLYGNKEFIDEDDIQNLVYLKAVIKETLRLYAPAPMVPRETNQGFILSGYKIEPKTLVYVNVWAIHRDPETWNDPEEFYPERFLNNDIDFKGQDFELIPFGAGRRICPGIPLGIATVEMITANLLNSFDWKMPEGMTKEDIDTEGLPGLASHKKNHLCLVAKNCF 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00201 500 SUPERFAMILY Cytochrome P450 33 495 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00201 500 Gene3D Cytochrome P450 25 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00201 500 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 435 444 IPR017972 GO:0005506|GO:0016705
Trre13g00201 500 FunFam Cytochrome P450 83B1 19 495 - -
Trre13g00201 500 PANTHER CYTOCHROME P450 71B11-RELATED 18 497 - -
Trre13g00201 500 Pfam Cytochrome P450 33 491 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00201 500 CDD CYP71-like 64 492 - -
Trre13g00201 500 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00201 500 PRINTS E-class P450 group I signature 442 465 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00201 500 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00201 500 PRINTS E-class P450 group I signature 356 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00201 500 PRINTS E-class P450 group I signature 432 442 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00201 500 PRINTS E-class P450 group I signature 179 197 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00201 500 PRINTS E-class P450 group I signature 396 420 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00201 500 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00201 500 PRINTS E-class P450 group I signature 85 106 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00201 500 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00201 500 PRINTS P450 superfamily signature 433 442 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00201 500 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00201 Trre-Chr13 1659296 1661745 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00201 17 495 Cytochrome P450 AT4G31500 47.942 2.90e-157 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00201 - - gmx:100806470 709.138