Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00200 ATGGTGTCATTTCTTCACATACTTCTAGCTTTTCCTCTATTGATATTTTTCCTTTTCATAAGATACAAAACCATTGTTAAGAACTCATCAACTCTTCCAAAAGGTCCAAAAGGCCTACCAATAATTGGCAATCTTCATCAACTTGATAGTTCAAAACTTCATGTTCAACTTTGGAAACTCTCAAAAATCTATGGTCCTCTTTTCTCTCTTAAAATTGGTTTCAAAAAAGCAATTGTTGTTTCATCACCTAAACTAGCTAAAGAAATTCTCAAAGATCATGACCATGATGTTTGTAGTAGACAACCTTCATATGGTACACAAAAATTGTCTTACAATGGCTTAGATATGATATTTTCACCATACAATGATTGTTGGAGAGAAATAAGAAAAATTTGTGTTGTCCATTTTTTTAGCTCCAAAAAAATTTCTAGCTTTTCACATGTGAGAAAATTTGAGGTCAAGCAAATGATAAAAAGAATTTCTAAGCATGGTGATTCGTCCAAAATTTCAAACCTTAGTGAGATCTTAATGTCTGTCACAAGCTCTATAGTTTGTAGAATTGCTTTTGGAAAAAGTTATGAAAATGAAGGGGGTGAGAAAAGTAGGTTCCATGGTTTACTTAATGAGACACAAGCTATTTTTCTTTCTTTTTTTGTTTCGGATTATATTCCTTTCATAGGGTGGGTTGATAAACTCACAGGGTTAGTTGATCGTGTTGATAATACTTTTAAAGCTTTGGATGGGTTTTTTGAAGAAGTTCTTAAGGAACATCTTAATCTTAATCCTATTAATAGGAAGAAAGAAGAACAAGAGAAGGATATAGTTGATGTGTTACTTGAGTTAAAAAAGAAGGGTCGTCTCTCAATTGATCTTACCAATGATCACATCAAAGCAGTTATTATGAACCTACTTGTAGCAGCTACTGACACAAGTGCAGCCACATCAGTTTGGGTGATGACTGGACTAATGAAGAATCCAAGAGCAATGAAGAAAGCTCAGGAAGAAGTTAGAAACCTCTATGGCAACAAAGAGTTCATAGATGAAGATGATATTCAAAACCTTGTATATCTTAAGGCCGTGATAAAAGAGACATTAAGATTCTATACACCAGCACCAATGGTACCAAGAGAAACCAATCAAGGTTTCATTCTAAATGGTTATAAAATAGAGCCAAAAACTTTAGTATATGTGAACGTTTGGGCTATTCATAGGGATCCTGAGACATGGAATGATCCAGAAGAGTTTTATCCCGAGAGATTTTTAAACAGTGATATAGATTTTAAAGGACAAGATTTTGAATTGATTCCGTTTGGTGCAGGGCGTAGAATTTGCCCTGGCATACCACTAGGAATTGCTACGGTGGAAATGATAACTGCAAATCTTCTAAATTCATTTGATTGGGAAATGCCTGAAGGGATGACAAAAGAAGATATAGACACTGAAGGACTACCGGGACTCACTAGTCACAAGAAGAATCATCTTTGCCTTGTTGCCAAAAACCGCTTTTGA 1509 0.3472 MVSFLHILLAFPLLIFFLFIRYKTIVKNSSTLPKGPKGLPIIGNLHQLDSSKLHVQLWKLSKIYGPLFSLKIGFKKAIVVSSPKLAKEILKDHDHDVCSRQPSYGTQKLSYNGLDMIFSPYNDCWREIRKICVVHFFSSKKISSFSHVRKFEVKQMIKRISKHGDSSKISNLSEILMSVTSSIVCRIAFGKSYENEGGEKSRFHGLLNETQAIFLSFFVSDYIPFIGWVDKLTGLVDRVDNTFKALDGFFEEVLKEHLNLNPINRKKEEQEKDIVDVLLELKKKGRLSIDLTNDHIKAVIMNLLVAATDTSAATSVWVMTGLMKNPRAMKKAQEEVRNLYGNKEFIDEDDIQNLVYLKAVIKETLRFYTPAPMVPRETNQGFILNGYKIEPKTLVYVNVWAIHRDPETWNDPEEFYPERFLNSDIDFKGQDFELIPFGAGRRICPGIPLGIATVEMITANLLNSFDWEMPEGMTKEDIDTEGLPGLTSHKKNHLCLVAKNRF 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00200 502 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 437 446 IPR017972 GO:0005506|GO:0016705
Trre13g00200 502 PRINTS E-class P450 group I signature 398 422 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00200 502 PRINTS E-class P450 group I signature 444 467 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00200 502 PRINTS E-class P450 group I signature 315 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00200 502 PRINTS E-class P450 group I signature 295 312 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00200 502 PRINTS E-class P450 group I signature 85 106 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00200 502 PRINTS E-class P450 group I signature 358 376 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00200 502 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00200 502 PRINTS E-class P450 group I signature 179 197 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00200 502 PRINTS E-class P450 group I signature 434 444 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00200 502 PANTHER CYTOCHROME P450 71B11-RELATED 18 499 - -
Trre13g00200 502 Pfam Cytochrome P450 33 493 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00200 502 PRINTS P450 superfamily signature 435 444 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00200 502 PRINTS P450 superfamily signature 306 323 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00200 502 PRINTS P450 superfamily signature 359 370 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00200 502 SUPERFAMILY Cytochrome P450 33 501 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00200 502 FunFam Cytochrome P450 83B1 20 497 - -
Trre13g00200 502 Gene3D Cytochrome P450 25 501 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00200 502 Coils Coil 329 349 - -
Trre13g00200 502 CDD CYP71-like 64 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00200 Trre-Chr13 1651815 1654811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00200 17 497 Cytochrome P450 AT4G31500 47.746 4.14e-156 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00200 - - gmx:100806470 708.753