Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00187 ATGAGAACCCTAATAAAAAAAGGAAGTCGCAAGTTCCCCGGTGAAGGAGAGGGGTCAATGATTGAGAAGAGAAAGCAATTTCTTGCATGTTGGTTATTTCTGCTGATAAAACCGCCAAACAAGGGTATTGTTGTCTGCGGCGCAGCGACGACAAAGAGGGTTTTTGACTCTCAGCTCAATCGCTCTCTTTTGCGTTTAACTCGTCTGCGCAAGTTTGAGACAGCTAAGTACTACTTCACTGTCATTGATGCCCCCGGACACAGGGATTTCATTAAGAATATGATTACTGGGACTTCCCAAGCTGATTGTGCTGTTCTTATCATTGACTCCACTACTGATGGTTTTCAAGCTGGTTTTTCCAAGGATGGTCAGACCCGTGAACATGCTCTCCTTGCTTTCACTCTTGGTGTGAATCAAATGATCTGCTGCTGCAACAAGATGGATGCTACAACACCCAAGTACTCCAAGGGAGACAACTTGATTGATCGTTCGAAAAATTTCGATTGGTACAAGGGTCCAACCCTTCTTGAGGCTCTTGACCAAATCAACGAGCCTAAGAGGCCATCGGACAAGCCCCTCCGATTACCACTACAAGCTGTTTACAAGATTAGAGGAATGGGAACTGTTCCTCTCAGGCGTGTTGAGACCGGTCTCTTGAAACCTGGAATGACTGTGACTTTTGCACCAACTGGACTTCAAACTGAAGTCAAGTCTGTGGAGATGCACCATGAAGCTCTTATTAAGGCCTTTCCCGGTGACAATGTTGGATTTCATGTTAAGAATGTTGCTGTTAAAGATCTCAAGCGTGGTTATGTTGCCTCAAACTCCATGGATGATCCAGCCAAGGAGGCTGCTAACTTTACATCTCAAGTAATCACTATTAATCACCCTGGGCAGATTGTAAATGGCTATACCCCTGTTCTTGATTGCCACACCTCACACACTTTTGTCAAGTTTTCTAAGCTTCTTTCCAAGATTGACAAGCGCTATGGTAAGGAAATTGAGAAGGAGCCCAAATTCCTGAAAAATGGTGATTCAGGTATCATTAAGATGATTCCCACCAAGCCAATGGTGGTTGAGACTTTCTCTGAATATCCTCCACTCGGCAGATTCGCCGTAAGAGACATGCGTCAAACTGTGGCTGTTGGAGTCATCAAGACTGTGGAGAAGAAGGAAGCCACATCAGAAGCATCAGATAATAATCTTTATGCCAAATCTTTATTAGAAGAAATGGAGGCTCAACTATATAGCAAAGAAAAATTTTTTGAGGTGGATGAGAAGAGGCTGGAGGTGAAAAGACAAATGTTGGAGATGGAAAAGCAAATACTAGAGATGAAAATGCAGATGGTGGAAAAGAACAAGGAATTTATATCAGACAAAGAATTGATGCTTGAGAAGAGAGCGAAATTGATAGAAGAAAATGAAGTATATCTTAGAGAGCAAAAAGATGCATTTACAAAAGCTTTGGAAACTACTGAAAATTTTGACCCTACTTCTCGAGAGCCAGTATCTGCCGGTGACCACATGAAGACCATGCTGACGATATCGTTTGTCATCTGGTATATGCACGGGGAATTTTATAAACTGCACGTTGAACACCGCCCTAATCATAAACAAATGCCATATACTATCATCATGGGTACCATTATGGAAGCTGCAAGAGTACTTTTTGATAAGGTGGTGTGTGGATTCTCTGTTTTCTTTACGTTTTTGGCGTTGTTTGTTCTTGTGTGCTGGCAATCTACTAAGCGCCGCAGATCGTTAGTCGATTTGCATGCTCGATTGGAAATCAAGTGTAACCAATTGATAGACAAACTTGTCTGTGGTGATGCTGTCAAGGAAGAAGCAGAAAAGAATGCCAAAGAAGAAAGACAGAAAAAACAAGCTGAAGAAGAAAGACAAAGAAAGCAAGTTGAAGACATAGAGCATGTCGTAGTGAATATTTTCAACAGCAATCAGGGTTCATCTCTTCGAAGACGATCTTGA 1986 0.4215 MRTLIKKGSRKFPGEGEGSMIEKRKQFLACWLFLLIKPPNKGIVVCGAATTKRVFDSQLNRSLLRLTRLRKFETAKYYFTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTDGFQAGFSKDGQTREHALLAFTLGVNQMICCCNKMDATTPKYSKGDNLIDRSKNFDWYKGPTLLEALDQINEPKRPSDKPLRLPLQAVYKIRGMGTVPLRRVETGLLKPGMTVTFAPTGLQTEVKSVEMHHEALIKAFPGDNVGFHVKNVAVKDLKRGYVASNSMDDPAKEAANFTSQVITINHPGQIVNGYTPVLDCHTSHTFVKFSKLLSKIDKRYGKEIEKEPKFLKNGDSGIIKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKTVEKKEATSEASDNNLYAKSLLEEMEAQLYSKEKFFEVDEKRLEVKRQMLEMEKQILEMKMQMVEKNKEFISDKELMLEKRAKLIEENEVYLREQKDAFTKALETTENFDPTSREPVSAGDHMKTMLTISFVIWYMHGEFYKLHVEHRPNHKQMPYTIIMGTIMEAARVLFDKVVCGFSVFFTFLALFVLVCWQSTKRRRSLVDLHARLEIKCNQLIDKLVCGDAVKEEAEKNAKEERQKKQAEEERQRKQVEDIEHVVVNIFNSNQGSSLRRRS 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00187 661 Gene3D - 49 165 IPR027417 -
Trre13g00187 661 Pfam Elongation factor Tu domain 2 207 272 IPR004161 GO:0005525
Trre13g00187 661 Gene3D Translation factors 166 276 - -
Trre13g00187 661 Pfam Elongation factor Tu C-terminal domain 281 388 IPR004160 -
Trre13g00187 661 Coils Coil 426 455 - -
Trre13g00187 661 Gene3D Translation factors 282 389 - -
Trre13g00187 661 CDD EF1_alpha_II 189 279 - -
Trre13g00187 661 FunFam Elongation factor 1-alpha 282 389 - -
Trre13g00187 661 SUPERFAMILY Translation proteins 185 276 IPR009000 -
Trre13g00187 661 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 285 388 IPR009001 -
Trre13g00187 661 Pfam Elongation factor Tu GTP binding domain 71 158 IPR000795 GO:0003924|GO:0005525
Trre13g00187 661 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 208 IPR027417 -
Trre13g00187 661 Coils Coil 611 641 - -
Trre13g00187 661 PRINTS GTP-binding elongation factor signature 140 149 IPR000795 GO:0003924|GO:0005525
Trre13g00187 661 PRINTS GTP-binding elongation factor signature 96 107 IPR000795 GO:0003924|GO:0005525
Trre13g00187 661 PRINTS GTP-binding elongation factor signature 80 90 IPR000795 GO:0003924|GO:0005525
Trre13g00187 661 FunFam Elongation factor 1-alpha 188 275 - -
Trre13g00187 661 CDD EF1_alpha_III 282 385 - -
Trre13g00187 661 PANTHER TRANSLATION FACTOR 156 392 - -
Trre13g00187 661 MobiDBLite consensus disorder prediction 617 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00187 Trre-Chr13 1575100 1578605 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00187 69 395 Eukaryotic Initiation Factors Gene Family AT5G60390 77.778 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00187 K03231 - qsu:111999428 564.303