Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00183 ATGTCAGAAAAACTTCAAAACAACTATCCAATATTAAATGTGCCTTTACTATCTGAGTGGAAGAAGTTAGGACATTCCATAGATGAGGAGAAGGTCATAGCCTCTAATCCTCCTGACAAAAACACAATATCTTTATATAGAACATGTTTTAATGGAGTCAATGCAATTTCAGGTGTTGGAATACTATCAGTTCCATATGCTTTAGCCTCTGGAGGATGGTTAAGTTTGACATTTTTATTTTCTATTGCAGCAGTAGCATTTTACTCAGGTTTATTAATGAAAAGATGCATGGAAAAAAATTCCAACATTAGAACTTATCCTGATATAGGTGAACTTGCATTTGGAAAAACAGGAAGATTAATTGTATCAATTTCAATGTACACAGAACTTTACTTGGTTTCAGCAGGGTTTTTGATTCTTGAAGGAGATAATTTAAGCAACTTAATTCCAATTGAAGAGTTTCAAGTGGTTGGTTTATCAATTAGTGCAAAACAATTTTTTGTGATATTGGTTGCACTAATTATTTTGCCAACAGTTTGGTTAGATGATTTAAGTTTACTTTCATATGTATCTGCAAGTGGTGTATTTGCTTCTATAATCATAATTTTGTCAATATCATGGACTGGAGCATTTGATGAAGTTGGTTTTCATGAAAAGTGTGATATTGTAAATTGGAATGGAATCCCTACAGCTGTTAGCTTGTATGCTTTTTGTTATTGTGCTCATCCAGTCTTCCCTACTCTCTATAATTCCATGAGGAACAAACACCAATTCACTAATGTCCTAATTGTATGCTTTATATTAACCACCTTTGGTTATGCATCAATGGCTATAGTTGGTTACTTAATGTTTGGTTCAAAAGTTGAATCACAAGTAACATTAAATTTACCAATAAACAAAATAAGTTCAAGAATAGCAATATACACAACTTTGGTGAATCCAATTTCAAAATTTGCTTTAATGGCAACACCAATTACAAATGCTTTAAAAGAATTACTTCCAAGCACATACAAGAATAACAAAGTGACAAATATATTTGTGAGTACTGCTCTTGTAATTAGCACTGTAATTGTTGCTTTGAGTGTTCCTTTTTTTGGGTATCTCATGTCATTGGTTGGAGCATTTTTAAGTGTCACTGCCTCTGTTTTGCTTCCTTGCTTGTGCTACTTGAAGATTTCTGGCACTTATAGGAAATTTGGGTTTGAGACATTTACCATTGTGGTAATAATATTAGGAGGAATAGTTATGGGAATATATGGGACATATACTTCAATTGTTGATATAGCAAAAAGTTTGTAA 1299 0.3241 MSEKLQNNYPILNVPLLSEWKKLGHSIDEEKVIASNPPDKNTISLYRTCFNGVNAISGVGILSVPYALASGGWLSLTFLFSIAAVAFYSGLLMKRCMEKNSNIRTYPDIGELAFGKTGRLIVSISMYTELYLVSAGFLILEGDNLSNLIPIEEFQVVGLSISAKQFFVILVALIILPTVWLDDLSLLSYVSASGVFASIIIILSISWTGAFDEVGFHEKCDIVNWNGIPTAVSLYAFCYCAHPVFPTLYNSMRNKHQFTNVLIVCFILTTFGYASMAIVGYLMFGSKVESQVTLNLPINKISSRIAIYTTLVNPISKFALMATPITNALKELLPSTYKNNKVTNIFVSTALVISTVIVALSVPFFGYLMSLVGAFLSVTASVLLPCLCYLKISGTYRKFGFETFTIVVIILGGIVMGIYGTYTSIVDIAKSL 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00183 432 PANTHER OS05G0424000 PROTEIN-RELATED 51 414 - -
Trre13g00183 432 Pfam Transmembrane amino acid transporter protein 42 423 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00183 Trre-Chr13 1517074 1519550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00183 29 432 Amino Acid or Auxin Permease AAAP Family AT3G28960 56.683 3.89e-170 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00183 K15015 - gmx:100794374 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00183 13 1517074 1519550 Trre13g00183 13 1517074 1519550 ECH