Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00181 ATGGAGGGAATAGACAGATCAAGATCAACATGCCGTTTGGTAACTGTTACAAACGAGTTGCAAAATCGTATAACCCAAAAGCAATCAATGTACCCTCCTGGCTTTTCAAGAAATGTATTTGCAGAGGTCATAGGGACATTTTTGTTGGTGTTTGTCGGAAGTGGGACTGCAGCTATGAATGCAATTGATGAAAACAAAGTATCAAAATTGGGAGCTTCACTTGCAAGTGGATTCATTGTTACAGTTATGATATATGCAATTGGACACATCTCTGGTGCACACATGAATCCGGCTGTTTCCTTAGCTTTTGCCACCGTTAGCCATTTTCCTTGGAAACAGGTCCCATTTTACATTGCAGCTCAACTCACAGGAGCAATTTCTGCTTCATATACACTTAGAGTGTTGTTAGAACCATCAAAGCAGCTAGGTGCAACATCACCTTCTGGATCAAACATTCAAGCACTAATCATAGAAATTGTCACCACCTTCACCATGGTGTTCATCTCCACGGCGGTCGCCACCGACTCTAAAGCGACTAGAGAGCTTGCTGGAGTAGCAGTAGGTTCATCTGTTTGCATAGCAAGCATTGTTGCTGGACCAATATCAGGTGGGTCAATGAACCCAGCAAGGACATTAGGTCCTGCAATTGCTACTTCATCCTACAAAGGAATTTGGGTTTATATGGTTGGACCAATTACTGGTGCACTTTTAGGTGCATGGTCTTATGTTGTGATTCAGGAGACAAATCATAAACAAGATAATGCAACTTCACAATCTCCTCTTTCAATCAAGTTACAAAATGATATGACTGGCATTGAACTATAG 825 0.4158 MEGIDRSRSTCRLVTVTNELQNRITQKQSMYPPGFSRNVFAEVIGTFLLVFVGSGTAAMNAIDENKVSKLGASLASGFIVTVMIYAIGHISGAHMNPAVSLAFATVSHFPWKQVPFYIAAQLTGAISASYTLRVLLEPSKQLGATSPSGSNIQALIIEIVTTFTMVFISTAVATDSKATRELAGVAVGSSVCIASIVAGPISGGSMNPARTLGPAIATSSYKGIWVYMVGPITGALLGAWSYVVIQETNHKQDNATSQSPLSIKLQNDMTGIEL 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00181 274 CDD MIP 37 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g00181 274 NCBIfam MIP family channel protein 41 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g00181 274 SUPERFAMILY Aquaporin-like 29 253 IPR023271 -
Trre13g00181 274 Pfam Major intrinsic protein 35 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g00181 274 PANTHER AQUAPORIN NIP2-1 28 252 IPR034294 -
Trre13g00181 274 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g00181 274 PRINTS Major intrinsic protein family signature 188 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g00181 274 PRINTS Major intrinsic protein family signature 157 175 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g00181 274 PRINTS Major intrinsic protein family signature 225 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g00181 274 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g00181 274 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g00181 274 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Trre13g00181 274 Gene3D Glycerol uptake facilitator protein. 5 259 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00181 Trre-Chr13 1497846 1503083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00181 10 258 Major Intrinsic Protein MIP AT1G80760 41.961 1.55e-69 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00181 K09874 - gmx:100788071 353.984