Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00180 ATGAATATGGGAGATAACATCAGACAAGACCAAGTTGAAATTTCCATAGAATCTTTAGAAGCTGCAAATTTTAACAACCCTAATGACAATGACAATGTATCTGAAGAAGAAGTTGAAAAAAGTGAACCAAAGGGTGAATGTCGCTATTGCCATGAAGAAGAATTGGTTTCTAGGCTTGAAGCACCATGTGGTTGTGATGGAAGCTTAAAGTATGCTCACAGGACATGTGTTTCTCATTGGTGCAATGTCAAACGCAACATATTTTGTGAGATCTGCAAGCAGGTTTTCTCTCCAAATTATTCAGTGATCGGGCCTCCACCTTTGGATGATGACATTGTCATGAGTGAGCGATGGAGAATTCCGGGAACAAACATTAGAATGGTGTCACCATTTGTACTGATACAACATGGCATAAATCGCCTTCTCCGATCAATGAATACTGACTTCACATTGAGAAATCCTACTCCCGGCGTCATTTTTGGAACACTACTTCTTTTGTTTGTTGCATCGATGATTATAAGGGATGCATATTACTATACTCCACCCAAGGAAGATACATATTCTTGGATTATGTACATGGCTGTGATCGTGATCTCTGTGCCTATCTATATTTTATCATGGCTTTCAGAATGCAGAAATCGCGGTAGAGAGGATCATCAGCAGTGA 666 0.3964 MNMGDNIRQDQVEISIESLEAANFNNPNDNDNVSEEEVEKSEPKGECRYCHEEELVSRLEAPCGCDGSLKYAHRTCVSHWCNVKRNIFCEICKQVFSPNYSVIGPPPLDDDIVMSERWRIPGTNIRMVSPFVLIQHGINRLLRSMNTDFTLRNPTPGVIFGTLLLLFVASMIIRDAYYYTPPKEDTYSWIMYMAVIVISVPIYILSWLSECRNRGREDHQQ 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00180 221 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 29 216 IPR033275 -
Trre13g00180 221 SMART ringv_2 46 93 IPR011016 GO:0008270
Trre13g00180 221 Pfam RING-variant domain 47 92 IPR011016 GO:0008270
Trre13g00180 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 104 IPR013083 -
Trre13g00180 221 MobiDBLite consensus disorder prediction 19 40 - -
Trre13g00180 221 CDD RING_CH-C4HC3_MARCH 47 93 - -
Trre13g00180 221 ProSiteProfiles Zinc finger RING-CH-type profile. 39 99 IPR011016 GO:0008270
Trre13g00180 221 SUPERFAMILY RING/U-box 44 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00180 Trre-Chr13 1487186 1489507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00180 28 96 C3H Transcription Factor Family AT1G11020 32.895 2.67e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00180 - - cam:101504331 305.064