Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00176 ATGGACTTAACCCCAAACCCAACAACAACCCCAACACCAACAACAATACCAACCATTGTAACAACAACAACTACTTTAACTAAATCACCAGAACATGAAACCTCAACCCCAACAAAAATCACAACCTCAACAACTCCAAAAATCTCACCTTTTTCCAACGGTGTCCTCAAACGCCTCCACCACAATCACCACCACCTTAACAACCACTACCACCTTAACCACCACAACAACCACCACCAAGTAACCGTTACTTACAAAGAATGTCTCAAAAACCATGCAGCAAACTTAGGTGGTCATGCTCTCGACGGCTGCGGCGAATTTATGACATCACCCACCGCAACACCCGCCGACCCAACATCCTTAAAATGCGCTGCGTGTGGCTGTCACCGTAATTTCCACCGCCGTGAACCAGAAGAACCACCACTTTCAACCACCACACATGTCATTGAATATCAACCTCACCACCGTCATCAGCCACTTCCACCGCCGCCTTTTTCCAACCGCAGCCCAAATTCTTCATCTCCTCCGCCGATCTCCTCCACTTACTACCCTTCTGCACCTCACATGCTTCTTGCTCTCTCCACCGCCTTACCGGAAAACGTCTCCGGACCCATGATCTCTCCTGGGTCCCACACTAGAAAACGTTTCAGAACAAAATTTACTCAAGATCAGAAAGAAAAGATGTTGAAATTTGCTGAGAAAGTTGGATGGAAGATGCAGAAAAAAGATGATGAATTTACTCATGAATTTTGTAATGAGATTGGTGTTGATCGAAGTGTTCTTAAAGTTTGGATGCATAACAACAAAAACACTTTCTCTAAGCGAGAAAACATCAACAACAACATCAACAACATTAACAACAACAATGAGATTAATGTTGTTGGTGTTAAGAGTTTTATGCCTTATGAAGATGAAGAACACAAGATGAAGAATAACATTAATAAAGATGATATGAATGCTGAGATTCATAGCCTTAATCATTACCAGAATGATGGTGGAGTTGTTGTTCGTGCTAATGGTTCATCTTCTTCTTGA 1035 0.4261 MDLTPNPTTTPTPTTIPTIVTTTTTLTKSPEHETSTPTKITTSTTPKISPFSNGVLKRLHHNHHHLNNHYHLNHHNNHHQVTVTYKECLKNHAANLGGHALDGCGEFMTSPTATPADPTSLKCAACGCHRNFHRREPEEPPLSTTTHVIEYQPHHRHQPLPPPPFSNRSPNSSSPPPISSTYYPSAPHMLLALSTALPENVSGPMISPGSHTRKRFRTKFTQDQKEKMLKFAEKVGWKMQKKDDEFTHEFCNEIGVDRSVLKVWMHNNKNTFSKRENINNNINNINNNNEINVVGVKSFMPYEDEEHKMKNNINKDDMNAEIHSLNHYQNDGGVVVRANGSSSS 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00176 344 Coils Coil 268 288 - -
Trre13g00176 344 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 84 136 IPR006456 -
Trre13g00176 344 MobiDBLite consensus disorder prediction 153 181 - -
Trre13g00176 344 NCBIfam homeobox domain, ZF-HD class 213 270 IPR006455 -
Trre13g00176 344 MobiDBLite consensus disorder prediction 156 171 - -
Trre13g00176 344 FunFam Zinc-finger homeodomain protein 2 200 274 - -
Trre13g00176 344 SUPERFAMILY Homeodomain-like 205 274 IPR009057 -
Trre13g00176 344 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 85 136 IPR006456 -
Trre13g00176 344 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 63 271 - -
Trre13g00176 344 Pfam ZF-HD protein dimerisation region 83 137 IPR006456 -
Trre13g00176 344 Gene3D - 202 274 - -
Trre13g00176 344 MobiDBLite consensus disorder prediction 24 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00176 Trre-Chr13 1438119 1439153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00176 19 269 ZF-HD Transcription Factor Family AT5G15210 50.588 6.27e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Trre13g00176 ZF-HD_dimer 1.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00176 - - psat:127128550 427.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00176 13 1438119 1439153 Trre13g00176 13 1438119 1439153 ECH
Trre11g00454 11 3654711 3655700 Trre13g00176 13 1438119 1439153 PCT