Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00174 ATGGGAAGACCACCTTGTTGTGACAAAGAAGGTGTAAAGAAAGGACCATGGACACCTGAAGAAGATATAATACTTGTTACTTATATACAAGAACATGGTCCTGGAAATTGGAGGGCTGTTCCAACCAAGACAGGGTTGTCAAGATGCAGCAAGAGTTGTAGACTTAGATGGACTAATTACTTAAGGCCAGGAATCAAGAGGGGCAACTTCACTGAACAAGAGGAGAAGATGATTATCCATCTTCAAGATCTTTTAGGAAATAGATGGGCTGCAATAGCATCATACCTTCCACAAAGAACAGATAATGACATAAAAAACTATTGGAATACTCATTTGAAAAAGAAGCTCAAGAAAATGCAAGCAGAATTACCACAATCTATTTGCTATGCTTCAAGTGCTGATAACATAGCTAGGTTACTAAAGGGTTGGATGAAAAATCCAATAAAATCATCTAGAAGTACTAATTCATCTGTGGCACAAAATTCCTTCAACAACATTGATTGTGTTTCTAGTAGTGGAACAAAAGGTGAAAGTGAAATATTGTCTGAGACTTTTGAATCTTTGTTTGGTTTTGAGTCTTTGGAATCTTTGGAGTCTTCGAATTCCGAATTCTCTCATCAATCTTTGTCGCCAGACGCAACGGTTTTACAAGATGAAAGTAAGCCTGAAGTTGGTTCAGAAACAATGCCCTTTTCTTTGCTTGAGAAATGGCTTCTTGATGAAGCCGGTTGTCCCGAGAAAGTGGGATTAGGTTGTGGTGATCATGCTCGGGTTTTCTAG 780 0.3859 MGRPPCCDKEGVKKGPWTPEEDIILVTYIQEHGPGNWRAVPTKTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKMQAELPQSICYASSADNIARLLKGWMKNPIKSSRSTNSSVAQNSFNNIDCVSSSGTKGESEILSETFESLFGFESLESLESSNSEFSHQSLSPDATVLQDESKPEVGSETMPFSLLEKWLLDEAGCPEKVGLGCGDHARVF 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00174 259 CDD SANT 69 112 IPR001005 -
Trre13g00174 259 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre13g00174 259 FunFam Transcription factor MYB30 68 126 - -
Trre13g00174 259 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 204 - -
Trre13g00174 259 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre13g00174 259 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Trre13g00174 259 CDD SANT 16 61 IPR001005 -
Trre13g00174 259 MobiDBLite consensus disorder prediction 202 224 - -
Trre13g00174 259 Gene3D - 68 132 - -
Trre13g00174 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Trre13g00174 259 Gene3D - 13 66 - -
Trre13g00174 259 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre13g00174 259 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre13g00174 259 SMART sant 66 114 IPR001005 -
Trre13g00174 259 SMART sant 13 63 IPR001005 -
Trre13g00174 259 FunFam MYB-related transcription factor 13 66 - -
Trre13g00174 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00174 Trre-Chr13 1412710 1414471 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00174 126 259 MYB Transcription Factor Family AT5G62470 33.582 1.93e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre13g00174 Myb_DNA-binding 8.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00174 K09422 - gmx:780543 319.701