Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00173 ATGGGAAGACCACCTTGTTGTGACAAAGAAGGTGTAAAGAAAGGACCATGGACACCTGAAGAAGATATAATACTTGTTACTTATATACAAGAACATGGTCCTGGAAATTGGAGGGCTGTTCCAACCAAGACAGGGTTGTCAAGATGCAGCAAGAGTTGTAGACTTAGATGGACTAATTACTTAAGGCCAGGAATCAAGAGGGGCAACTTCACTGAACAAGAGGAGAAGATGATTATCCATCTTCAAGATCTTTTAGGAAATAGATGGGCTGCAATAGCATCATACCTTCCACAAAGAACAGATAATGACATAAAAAACTATTGGAATACTCATTTGAAAAAGAAGCTCAAGAAAATGCAAGCAGGTAATAATAATAATTCTGAAGGAAATTTTGAGGAAGAAAATTTTTCAGCATCACAAAGAATTCCTAGAGGTCAATGGGAAAGAAGACTTCAAACAGATATTCAAATGGCCAAAAAAGCACTTAATGAAGCACTTTCAGTTTCACCACAAAAATTATCTTCTTCTAATTTTTCAGCTTCAAACCTTTCTAATAGTAACTCTATTTCTTCCACTAAAGAATTACCACAATCTATTTGCTATGCTTCAAGTGCTGATAACATAGCTAGGTTACTAAAGGGTTGGATGAAAAATCCAATAAAATCATCTAGAAGTACTAATTCATCTGTGGCACAAAATTCCTTCAACAACATTGATTGTGTTTCTAGTAGTGGAACAAAAGGTGAAAGTGAAATATTGTCTGAGACTTTTGAATCTTTGTTTGGTTTTGAGTCTTTGGAATCTTTGGAGTCTTCGAATTCCGAATTCTCTCATCAATCTTTGTCGCCAGACGCAACGGTTTTACAAGATGAAAGTAAGCCTGAAGTTGGTTCAGAAACAATGCCCTTTTCTTTGCTTGAGAAATGGCTTCTTGATGAAGCCGGTTGTCCCGAGAAAGTGGGATTAGGTTGTGGTGATCATGCTCGGGTTTTCTAG 996 0.3685 MGRPPCCDKEGVKKGPWTPEEDIILVTYIQEHGPGNWRAVPTKTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKMQAGNNNNSEGNFEEENFSASQRIPRGQWERRLQTDIQMAKKALNEALSVSPQKLSSSNFSASNLSNSNSISSTKELPQSICYASSADNIARLLKGWMKNPIKSSRSTNSSVAQNSFNNIDCVSSSGTKGESEILSETFESLFGFESLESLESSNSEFSHQSLSPDATVLQDESKPEVGSETMPFSLLEKWLLDEAGCPEKVGLGCGDHARVF 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00173 331 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre13g00173 331 CDD SANT 69 112 IPR001005 -
Trre13g00173 331 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre13g00173 331 CDD SANT 16 61 IPR001005 -
Trre13g00173 331 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre13g00173 331 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Trre13g00173 331 FunFam MYB-related transcription factor 13 66 - -
Trre13g00173 331 Gene3D - 68 140 - -
Trre13g00173 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Trre13g00173 331 MobiDBLite consensus disorder prediction 274 296 - -
Trre13g00173 331 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 239 - -
Trre13g00173 331 FunFam Transcription factor MYB30 68 126 - -
Trre13g00173 331 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre13g00173 331 SMART sant 66 114 IPR001005 -
Trre13g00173 331 SMART sant 13 63 IPR001005 -
Trre13g00173 331 Gene3D - 13 66 - -
Trre13g00173 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00173 Trre-Chr13 1412710 1414471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00173 1 331 MYB Transcription Factor Family AT5G62470 50.138 7.96e-107 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre13g00173 Myb_DNA-binding 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00173 K09422 - gmx:778080 459.144