Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00167 ATGGTTCAGAGACTCACATACCGAAGGCGTCATAGCTATGCCACCAAATCCAACCAGCATCGTGTTGTTAAGACACCTGGTGGAAAGTTGGTTTATCAGACTACTAAGAAGAGAGCCAGTGGACCTAAGTGTCCTGTTACTGGAAAGAGGATCCAAGGGATTCCACACTTGAGACCTACTGAATACAAGAGGTCTAGATTGCCTCGTAACCGTAGGACTGTAAACAGAGCATACGGTGGTGTCTTATCTGGAGGAGCTGTTAGGGAAAGGATTATTCGTGCTTTCCTTGTTGAAGAGCAAAAAATCGTAAAGAAAGTTTTGAAGATCCAGAAGACAAAAGAAAAGCAAGCATCCAAGAGTTAA 363 0.4353 MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKTKEKQASKS 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00167 120 ProSitePatterns Ribosomal protein L34e signature. 15 28 IPR018065 -
Trre13g00167 120 Pfam Ribosomal protein L34e 1 96 IPR008195 GO:0003735|GO:0005840|GO:0006412
Trre13g00167 120 Gene3D - 39 120 - -
Trre13g00167 120 PANTHER 60S RIBOSOMAL PROTEIN L34 1 116 IPR008195 GO:0003735|GO:0005840|GO:0006412
Trre13g00167 120 Gene3D - 1 37 - -
Trre13g00167 120 PRINTS Ribosomal protein L34 signature 13 26 IPR008195 GO:0003735|GO:0005840|GO:0006412
Trre13g00167 120 PRINTS Ribosomal protein L34 signature 44 54 IPR008195 GO:0003735|GO:0005840|GO:0006412
Trre13g00167 120 PRINTS Ribosomal protein L34 signature 26 43 IPR008195 GO:0003735|GO:0005840|GO:0006412
Trre13g00167 120 PRINTS Ribosomal protein L34 signature 66 88 IPR008195 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00167 Trre-Chr13 1334997 1336533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00167 1 119 Cytoplasmic Ribosomal Protein Gene Family AT1G69620 91.597 1.92e-75 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00167 K02915 - gmx:100785061 215.312
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00167 13 1334997 1336533 Trre13g00167 13 1334997 1336533 ECH