Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00164 ATGTCTAGCAGAAGATCAAGGCAACAATCAGGAGGGTCTACAAGAATCTCTGATGATCAAATTATTGATCTTGTTTGCAAGTTGCGCCAACTTGTTCCAGAAATTCGCAATAGGCGCTCGGACAAGGTACCCGCTTCTAAGGTCCTACAAGAAACTTGCAACTATATCAGAAACTTACAAAGAGAGGTTGATGATTTAAGCATGCGATTGTCTCAATTGTTGGCTACTATTGATGCTGATAGTGCTGAAGCTTCTATCATTAGGAGCCTACTTAACCAATGA 282 0.4078 MSSRRSRQQSGGSTRISDDQIIDLVCKLRQLVPEIRNRRSDKVPASKVLQETCNYIRNLQREVDDLSMRLSQLLATIDADSAEASIIRSLLNQ 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00164 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 23 79 IPR036638 GO:0046983
Trre13g00164 93 FunFam Transcription factor ILI6 5 88 - -
Trre13g00164 93 Pfam Helix-loop-helix DNA-binding domain 20 60 IPR011598 GO:0046983
Trre13g00164 93 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
Trre13g00164 93 Coils Coil 49 76 - -
Trre13g00164 93 Gene3D - 15 88 IPR036638 GO:0046983
Trre13g00164 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 5 59 IPR011598 GO:0046983
Trre13g00164 93 CDD bHLH_AtPRE_like 12 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00164 Trre-Chr13 1295839 1296838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00164 13 91 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 72.500 3.71e-34 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre13g00164 HLH 0.0002 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00164 - - cill:122307724 145.591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00164 13 1295839 1296838 Trre13g00164 13 1295839 1296838 ECH
Trre13g00164 13 1295839 1296838 Trre5g01671 5 12074302 12075646 ECH
Trre9g02636 9 32587535 32588281 Trre13g00164 13 1295839 1296838 ECH
Trre11g00431 11 3409124 3413717 Trre13g00164 13 1295839 1296838 PCT