Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00160 ATGTGTATAGTCTTTCTTCTTATTATTTTGGGTTTGATTATTGGGACTGAATCATCTACATTAAGATCTCAACTTAAAATAGAAGAAAACGCTATATTGAATAGTGGATGGTGGAACACTTCTCATGCACACTTCAACATCTCCGATCGGTGTAATTGGCCTCAGATATCATGCAACAAGGCTGGAAGCATAACAGAAATCAGCATAGATGAATTCAACAACACAATGTTATATGAAAATAGGATCGACTTTGCAACATTGAACTTGACTGCTTTCCACAATTTAGAAAGGCTTGTTATCACGTCTGCTGGACTAGAAGGGACTATCCCAAAAGAAATTGGTCTTCTCTCTAAGCTTATTTATCTTTATCTATATGGAAATTCTCTTGTGGGTAAGATACCTCCTTCACTTGGAAATCTCACAACACTCACTCAGCTTGATCTATCTAAAAATTATCTTGTAGGTGAGATACCTCCTTCTCTTGGAAATCTTACCAAACTCACAGGTCTTTATCTATATGAAAATTATCTTGTTGGTGAGATACCTCCTTCTTTAGGAAATCTCACGAAACTCACTGATCTTTATCTATTTAGAAATTCTCTTGTAGGTGAGATACCTCCTTCTCTAGGCAACCTTAGAAAATTAACTACGTTACAAATATCTTACAACAAGCTTCATGGTTCCATTCCTCATGAGTTGGGATTCATTAAAACTCTAGTTATTTTAGGTCTATCTGATAACTTCTTTAATGGTAGTTTTCCCATTTCCATCATAGGAAATCTCACACAATTAGAGTACCTGGATATCTCCAACAACACCATTCAAGGTTCCATTCCTTTTGAGTTGGGGTTCTTAAAATATCTGACATCATTAGATCTATCATACAATAGATTCGATAGAAACTTGCCTATTTCCATTACAAATCTCACACAATTAAAATACCTTGACATTTCCCACAATTTACTCATTGGTACCCTTCCTTCTAATTTTTTCCTATTGGCAAATTATGAACTTTCCATTGACCTCAGTAACAACCTCATCAGTGGTGAAATCCCTTCTCAGTTTGGACATTTTCAAAATCTTAATTTAAGCAATAATAATCTCACTGGAATTGTTCCCCAATCTATCTGTAATGTCAATTTGTTGGACATTTCCTATAATAATTTGAAGGGACTCATTCCAAGTTGTATTGTTCCTTATAGGATAAGAGGGAACAAGGATGTATGCAGTACCTACATGTCATACAGCCAAATCAACTTCAAAATCCAACCTTGCAAAAATAGTAATAAAGTCATGCAATATGTTGTCATTGTTCTACCTATCCTTATTATTTTAGTCATAGCCTTCTCACTTCTCATGTGCATTAAACTTCGTAAGAATTCTATCAAGAACAAATATGGAAACACAATGGCAACAAAGCATGGGGATTTGTTTTGTATATGGAATTATGATGGAAAAATAGCGCATGATGACATCATAAGAGCAACAGAAGACTTTGACATGAGATATTGCATCGGGACAGGAGCGTATGGAAGTGTTTACAAGGCGAAATTACCATCTGGAAATGTTGTTGCCTTAAAAAAACTTCACAGCTATGAGGCAGAAGTGCCGGCTTTCGATGAGAGTTTCAGAAATGAAGTGAGAATATTATCAGAAATAAAGCACCGGCATATTGTTAAGCTTTATGGGTTTTGCTTGCACAAAAGAATCATGTTTTTGATTTATCAATACATGGAGAGAGGAAGCTTGTTTTCTGTCTTGTACGATGATGTAGAGGCCGTCGAATTGAAATGGAGAAAAAGGGTTAACATTGTTAAAAGAGTTGCATCTGCTCTATCATATCTTCATCATGATTTTACCTCTCCAATTGTGCATAGAGACATATCTAGTGGCAATATCTTGCTGAACAATGAGTGGCAGCCTAGTGTTTCCGACTTTGGTACAGCTCGACTCCTTCAACATGATTCGTCCAATCGAACAATAGTCGCTGGAACAATTGGATACATAGCTCCTGAGCTTGCTTATACTATGGTTGTGAGTGAAAAGTGCGATGTGTATAGCTTTGGAGTAGTGACACTAGAAACTTTGATGGGAAGGCACCCGCAGGAAATATTGTCGTCACTTCAATTAGCATCAACTCAAAGCATGAAATTATGTCAAGTATTAGACCAACGTCTCCCATTTCCAAATAATGCGATGGTTTTACTTGATATAATTCGTGTAGCAGTAATAGCGTTTGCGTGCTTAAATTTCAATCCAAGCTCTCGACCAACAATGAAACGTGTATCACAGAGTTTTGCCACTGAGCTTACACCATCAACCATTCCTTTGAGTGAGATTTCAATCCAGCAACTTATGAGTCAAGAACTCCAAGCATTGTTTCATATTGTCAACCATTGA 2400 0.365 MCIVFLLIILGLIIGTESSTLRSQLKIEENAILNSGWWNTSHAHFNISDRCNWPQISCNKAGSITEISIDEFNNTMLYENRIDFATLNLTAFHNLERLVITSAGLEGTIPKEIGLLSKLIYLYLYGNSLVGKIPPSLGNLTTLTQLDLSKNYLVGEIPPSLGNLTKLTGLYLYENYLVGEIPPSLGNLTKLTDLYLFRNSLVGEIPPSLGNLRKLTTLQISYNKLHGSIPHELGFIKTLVILGLSDNFFNGSFPISIIGNLTQLEYLDISNNTIQGSIPFELGFLKYLTSLDLSYNRFDRNLPISITNLTQLKYLDISHNLLIGTLPSNFFLLANYELSIDLSNNLISGEIPSQFGHFQNLNLSNNNLTGIVPQSICNVNLLDISYNNLKGLIPSCIVPYRIRGNKDVCSTYMSYSQINFKIQPCKNSNKVMQYVVIVLPILIILVIAFSLLMCIKLRKNSIKNKYGNTMATKHGDLFCIWNYDGKIAHDDIIRATEDFDMRYCIGTGAYGSVYKAKLPSGNVVALKKLHSYEAEVPAFDESFRNEVRILSEIKHRHIVKLYGFCLHKRIMFLIYQYMERGSLFSVLYDDVEAVELKWRKRVNIVKRVASALSYLHHDFTSPIVHRDISSGNILLNNEWQPSVSDFGTARLLQHDSSNRTIVAGTIGYIAPELAYTMVVSEKCDVYSFGVVTLETLMGRHPQEILSSLQLASTQSMKLCQVLDQRLPFPNNAMVLLDIIRVAVIAFACLNFNPSSRPTMKRVSQSFATELTPSTIPLSEISIQQLMSQELQALFHIVNH 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00160 799 ProSitePatterns Protein kinases ATP-binding region signature. 505 527 IPR017441 GO:0005524
Trre13g00160 799 ProSiteProfiles Protein kinase domain profile. 499 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00160 799 ProSitePatterns Tyrosine protein kinases specific active-site signature. 623 635 IPR008266 GO:0004672|GO:0006468
Trre13g00160 799 FunFam Leucine-rich repeat receptor protein kinase MSP1 462 577 - -
Trre13g00160 799 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 88 360 - -
Trre13g00160 799 SMART LRR_typ_2 212 236 IPR003591 -
Trre13g00160 799 SMART LRR_typ_2 355 378 IPR003591 -
Trre13g00160 799 SMART LRR_typ_2 116 140 IPR003591 -
Trre13g00160 799 SMART LRR_typ_2 164 188 IPR003591 -
Trre13g00160 799 SMART LRR_typ_2 261 285 IPR003591 -
Trre13g00160 799 SMART LRR_typ_2 309 333 IPR003591 -
Trre13g00160 799 Gene3D Ribonuclease Inhibitor 19 165 IPR032675 -
Trre13g00160 799 Gene3D Ribonuclease Inhibitor 166 418 IPR032675 -
Trre13g00160 799 Gene3D Transferase(Phosphotransferase) domain 1 578 774 - -
Trre13g00160 799 SUPERFAMILY RNI-like 89 406 - -
Trre13g00160 799 FunFam MDIS1-interacting receptor like kinase 2 578 772 - -
Trre13g00160 799 Pfam Protein kinase domain 505 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00160 799 Pfam Leucine Rich Repeat 311 330 IPR001611 GO:0005515
Trre13g00160 799 Pfam Leucine Rich Repeat 360 378 IPR001611 GO:0005515
Trre13g00160 799 Pfam Leucine Rich Repeat 118 140 IPR001611 GO:0005515
Trre13g00160 799 Gene3D Phosphorylase Kinase; domain 1 462 577 - -
Trre13g00160 799 SUPERFAMILY Protein kinase-like (PK-like) 487 764 IPR011009 -
Trre13g00160 799 Pfam Leucine rich repeat 238 298 IPR001611 GO:0005515
Trre13g00160 799 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 93 767 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00160 Trre-Chr13 1258813 1261328 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00160 88 671 Receptor kinase-like Gene Family AT4G08850 37.906 1.25e-129 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre13g00160 Pkinase 8.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00160 - - mtr:11422970 925.235