Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00158 ATGAACTCTTTAGTTTATAATTTCTATGGTCCAAAAATGTGGATGGTCTTTCTTATTTTTTTTTGGGGTTTGATTGTGGGGACTCAATCGGCCACAATGACATCTCAACTTGAAATGGAAGAAAATGCTATTTTGAAAAGTGGATGGTGGAACACTTCTGATCCAAACTACAACATCTCCAATCGGTGTAATTGGCCTCAGATATCATGCAACAATGCTGGAAGCATAACAAAAATCAGCATAGATGAATTCAACATCAACACAATGTTATATCAAAATAGGATTGACTTTGCAACATTGAACTTGACTGTTTTTCACAATTTAGAAAGGCTTGTTATCATGTTTGCTGGACTAGAAGGGACTATCCCAAAAGAAATTGGTCTTCTCTCTAAGCTTATTTATCTTGATCTGTCTTTCAGTTCTCTTGTGGGTAAGATACCTCCTTCACTTGGAAATCTTACCAAACTCACTCATCTTGATCTGTCTTCCAATAGACTCAATGGAAACTTGCCTGTTTCCATTACAAAACTCACACAATTAGAATACCTTGACATCTCTCACAATTATCTGAATGGTTCCTTCCCATATTCTAACTTTGAACAATTAAACCACTTAAAAAACCTTGACATTTCCCACAATTTAATCTTTGGTACCCTTCCTTCCAATTTTTTCCTACTAGCAAATTATGAACTTTCCATTGACCTCAGTAACAACTTCATCAGTGGTGAAATCCCTTCTCAGTTTGGACATTTTCGAAATCTTAATTTAAGCAATAATAATCTCACTGGATTGATTCCTGCATCTCTCTGTAATGGATATAATATAGACATTTCTAACAATTGTTTGAAGGGTCCCATTCCGAACTGTTTTGGTTCTATTACAACAATAGTGAATACCAACAATGATGTATGTATCGACACTTCATATAACCATTTCCAACATTGGATACCTCACAAGAAAAACAACAAAGTAATACATGATCTTGTCATTGTTCTTCCTATCATTATTATTCTAATCCTAGCCTTCTCACTTGTCTTGTACTTGAAACTTCGTCATAATTATATGAAGAACAAGCAGGCAAACAAAACCACTACAAAAAATGGAGATCTTTTTTGTATATGGAATTATGATGGCAAAATAGCACACGATGACATCATTAGAGCAACTGAAGACTTTGACATGAGATATTGCATTGGAACTGGAGCATATGGAAGTGTTTACAAGGCGCAATTACCATCTGGTAAAGTTGTTGCCTTAAAAAAACTTCACGGGTATGAAGCAGAAGTGCCGGCATTCGATGAAAGTTTCAGAAATGAAGTGAGAATATTATCCGAAATAAAGCACCGACATATTGTAAAGCTTTACGGATTCTGCTTGCACAAAAGAATCATGTTTTTGATCTATCAGTACATGGAGAAAGGAAGCTTGTTCTCTGTCTTGTATGATGATGTAGAGGCCGTGGAATTGAAATGGAGAAAAAGGGTTAACATTGTTAAAGGAGTTGCATCTGCTCTATCATATCTTCATCATGATTTTACCTCTCCAATTGTGCATAGAGACATATCTAGTGGCAATATCTTGCTGAACAATGAGTGGCAGCCTAGTGTTTCCGACTTTGGTACAGCTAGACTCCTTCAACATGATTCATCCAATCGAACAATTGTCGCTGGAACAAATGGATACATAGCTCCAGAGCTGGCTTATACTATGGTTGTGAGTGAAAATTGCGATGTGTATAGCTTTGGAGTAGTGACACTAGAAACTTTGATGGGAAGGCACCCTCAGGAAATATTGTCGTCACTTCAATTAGCATCAACTCAAAGCATGAAATTATGTCAAGTACTAGACCAACGTCTCCCATTTCCAAATAATGCGATGGTTTTACTTGATATAATTCGTGTAGCCGTAATAGCATTTGCGTGCTTAAATTTCAATCCTTGCTCTCGGCCAACAATGAAATGTGTGTCACAGATTTTTGCCTCTGAGCTTACACCATTAACCATTCCTTTGAGTGAAATTTCAATGCAGCAACTTATGAGTCAAGAATTCAAAGGAAAACTTTGGTCTATTTCTTGCCAGCAGTGCTGCTTTCATATGTTTTGCTTCAGAGATAATTGCTACTGTGCCACGGTTCTGATTTAG 2142 0.3665 MNSLVYNFYGPKMWMVFLIFFWGLIVGTQSATMTSQLEMEENAILKSGWWNTSDPNYNISNRCNWPQISCNNAGSITKISIDEFNINTMLYQNRIDFATLNLTVFHNLERLVIMFAGLEGTIPKEIGLLSKLIYLDLSFSSLVGKIPPSLGNLTKLTHLDLSSNRLNGNLPVSITKLTQLEYLDISHNYLNGSFPYSNFEQLNHLKNLDISHNLIFGTLPSNFFLLANYELSIDLSNNFISGEIPSQFGHFRNLNLSNNNLTGLIPASLCNGYNIDISNNCLKGPIPNCFGSITTIVNTNNDVCIDTSYNHFQHWIPHKKNNKVIHDLVIVLPIIIILILAFSLVLYLKLRHNYMKNKQANKTTTKNGDLFCIWNYDGKIAHDDIIRATEDFDMRYCIGTGAYGSVYKAQLPSGKVVALKKLHGYEAEVPAFDESFRNEVRILSEIKHRHIVKLYGFCLHKRIMFLIYQYMEKGSLFSVLYDDVEAVELKWRKRVNIVKGVASALSYLHHDFTSPIVHRDISSGNILLNNEWQPSVSDFGTARLLQHDSSNRTIVAGTNGYIAPELAYTMVVSENCDVYSFGVVTLETLMGRHPQEILSSLQLASTQSMKLCQVLDQRLPFPNNAMVLLDIIRVAVIAFACLNFNPCSRPTMKCVSQIFASELTPLTIPLSEISMQQLMSQEFKGKLWSISCQQCCFHMFCFRDNCYCATVLI 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00158 713 FunFam MDIS1-interacting receptor like kinase 2 471 665 - -
Trre13g00158 713 Pfam Protein kinase domain 398 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00158 713 Gene3D Ribonuclease Inhibitor 31 198 IPR032675 -
Trre13g00158 713 Gene3D Transferase(Phosphotransferase) domain 1 471 665 - -
Trre13g00158 713 SUPERFAMILY L domain-like 53 314 - -
Trre13g00158 713 SUPERFAMILY Protein kinase-like (PK-like) 379 657 IPR011009 -
Trre13g00158 713 PANTHER LEUCINE RICH REPEAT KINASE 2 101 661 - -
Trre13g00158 713 ProSitePatterns Protein kinases ATP-binding region signature. 398 420 IPR017441 GO:0005524
Trre13g00158 713 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 355 470 - -
Trre13g00158 713 ProSiteProfiles Protein kinase domain profile. 392 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00158 713 Pfam Leucine Rich Repeat 155 176 IPR001611 GO:0005515
Trre13g00158 713 Pfam Leucine Rich Repeat 131 153 IPR001611 GO:0005515
Trre13g00158 713 Pfam Leucine Rich Repeat 252 271 IPR001611 GO:0005515
Trre13g00158 713 FunFam Nuclear pore complex protein NUP107 29 196 - -
Trre13g00158 713 PRINTS Leucine-rich repeat signature 177 190 - -
Trre13g00158 713 PRINTS Leucine-rich repeat signature 156 169 - -
Trre13g00158 713 ProSitePatterns Tyrosine protein kinases specific active-site signature. 516 528 IPR008266 GO:0004672|GO:0006468
Trre13g00158 713 Gene3D Ribonuclease Inhibitor 251 328 IPR032675 -
Trre13g00158 713 Gene3D Ribonuclease Inhibitor 199 250 IPR032675 -
Trre13g00158 713 Gene3D Phosphorylase Kinase; domain 1 351 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00158 Trre-Chr13 1238824 1241573 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00158 118 564 Receptor kinase-like Gene Family AT4G08850 41.880 1.99e-105 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre13g00158 Pkinase 2.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00158 - - mtr:25497510 846.269