Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00156 ATGTGGATGGTCTTCGTTCTTATTATTTGGGGTTTGATTGTTGGAACTGAATCTTCTACATTGAGATCTCAACTTAAAATAGAAGAAAACGCTATATTGAATAGTGGATGGTGGAACACTTCTGATTCTCATGCACACTTCAACATCTCCAATCGGTGTAATTGGCCTCAGATATCATGCAACAAGGCTGGAAGCATAACAAAAATCAGCATAGAAGAAATCAGCAACACAATGTTATATCAAAATAGGATTCGCTTTGCAACATTCAACTTGACTGCTTTCCACAATTTAGAAAGCCTTGTTATCATGTTTGCTGGACTAGAAGGGACTATCCCAAAAGAAATTGGTCTTCTCTCTAAGCTTAATTATCTTTATCTGTCTGGAAATTCTCTTGTAGGTGAGATACCTCCTTCTCTAGGCAACCTTAGAAAATTAACTGAGTTAGAAATATCTTCCAACAAGCTTCAAGGTTCCATTCCTCATGAGTTGGGATTCATTAAAACTCTAGTTTCATTAGGTCTATCTGATAACTTCTTTAATGGTAGTTTTCCCATTTCCATCATAGGAAATCTCACACAATTAGAGTACCTGGACATCTCCCACAACACAATTCAAGGCTCCATTCCTTTTGAGTTGGGGTTCTTAAATAATCTGACAACTTTATATCTATCATACAATAGATTCGATAGAAACTTGCCTATTTCCATTACAAATCTCACACAATTAAAAAACCTTGACATTTCCCACAATTTACTCATTGGTACCCTTCCTTCTAATTTTTTCCTATTGGCAAATTATGAACTTTCCATTGACCTCAGTAACAACCTCATCAGTGGTGAAATCCCTTCTCAGTTTGGACATTTTCAAAATCTTAATTTAAGCAATAATAATCTCACTGGATTGATTCCTGCATCTCTCTGTAATGGATATAATATAGACATTTCTAACAATTGTTTGAAGGGTCCCCTTCCGAACTGTTTTGGTTCTATTACAACAATAGTGAATACCAACAATGATGTATGTATCGACACTTCATATAACCATTTCAAACATTGGATACCTCACAAGAAAAACAACAAAGTAATACATGATCTTGTCATTGTTCTTCCTATCATTATTATTCTAATCCTAGCCTTCTCACTTGTCTTGTACTTGAAACTTCGTCATAATTATATGAAGAACAAGCATACAAACAAAACCACTACAAAAAATGGAGATCTTTTTTGTATATGGAATTATGATGGCAAGATAGCACACAATGACATCATCAGAGCAACAGAAGACTTTGACATGAGATATTGTATTGGAACGGGGGCATATGGAAGTGTTTACAAGGCACAGTTACCATCTGGAAAAGTTGTTGCCTTAAAAAAACTTCATGGCTATGAAGCAGAAGTGTCGGCTTTTGATGAGAGTTTTAGAAATGAAGTGAAAATATTATCAGAAATAAAGCACCGACATATTGTGAAGCTTTATGGATTCTGCTTGCACAAAAGAATGATGTATTTGATTTATCATTACATGGAGAAAGGAAGCTTGTTCTCTGTCTTGTATGATGATGTAGAAGCCGTCGAATTCAAATGGAGAAAAAGGGTTAACATTGTTAAAGGAGTTGCATCAGCTCTTTCATATCTTCATCATGATTGCACAACTCCAATAGTGCATAGAGATGTATCGAGTGGCAATATCTTGCTAAACTCTGAGTGGCAGCCTAGTGTCTCTGACTTTGGCACAGCTCGACTCCTTCAATATGATTCATCCAATCGAACAATAGTTGCTGGAACAATCGGATATATAGCTCCTGAGCTTGCTTATACTATGGTTGTGAGTGAAAAGTGTGATGTATATAGTTTTGGAGTAGTGGCACTAGAAACTTTAATGGGAAAGCACCCTCAGGAAATGTTGTCGTCACTTCAGTTAGCATCAACTCAAAGCATGAAATTATGTCAAGTATTAGACCAACGTCTACCATTTCCAAATAATGCGATGGTTTTACATGACATAATTCGTGTAGCCGCAATAGCATTTGCATGCTTACATTTCAATCCTAGCTCTCGACCAACAATGAAATGTGTGTCAGAGTGTTTTGTCCTTGAGCCTCCACCATTAACCATTTCTTTGAGTGAAATTTCAATGCAGCAACTTATGAGTCAAGAATTCAAAGCACTATTTCATATTTTCAACCCATGA 2190 0.3612 MWMVFVLIIWGLIVGTESSTLRSQLKIEENAILNSGWWNTSDSHAHFNISNRCNWPQISCNKAGSITKISIEEISNTMLYQNRIRFATFNLTAFHNLESLVIMFAGLEGTIPKEIGLLSKLNYLYLSGNSLVGEIPPSLGNLRKLTELEISSNKLQGSIPHELGFIKTLVSLGLSDNFFNGSFPISIIGNLTQLEYLDISHNTIQGSIPFELGFLNNLTTLYLSYNRFDRNLPISITNLTQLKNLDISHNLLIGTLPSNFFLLANYELSIDLSNNLISGEIPSQFGHFQNLNLSNNNLTGLIPASLCNGYNIDISNNCLKGPLPNCFGSITTIVNTNNDVCIDTSYNHFKHWIPHKKNNKVIHDLVIVLPIIIILILAFSLVLYLKLRHNYMKNKHTNKTTTKNGDLFCIWNYDGKIAHNDIIRATEDFDMRYCIGTGAYGSVYKAQLPSGKVVALKKLHGYEAEVSAFDESFRNEVKILSEIKHRHIVKLYGFCLHKRMMYLIYHYMEKGSLFSVLYDDVEAVEFKWRKRVNIVKGVASALSYLHHDCTTPIVHRDVSSGNILLNSEWQPSVSDFGTARLLQYDSSNRTIVAGTIGYIAPELAYTMVVSEKCDVYSFGVVALETLMGKHPQEMLSSLQLASTQSMKLCQVLDQRLPFPNNAMVLHDIIRVAAIAFACLHFNPSSRPTMKCVSECFVLEPPPLTISLSEISMQQLMSQEFKALFHIFNP 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00156 729 Gene3D Ribonuclease Inhibitor 187 286 IPR032675 -
Trre13g00156 729 Gene3D Transferase(Phosphotransferase) domain 1 508 698 - -
Trre13g00156 729 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 94 694 - -
Trre13g00156 729 SMART LRR_typ_2 118 142 IPR003591 -
Trre13g00156 729 SMART LRR_typ_2 285 308 IPR003591 -
Trre13g00156 729 SMART LRR_typ_2 191 212 IPR003591 -
Trre13g00156 729 SMART LRR_typ_2 215 238 IPR003591 -
Trre13g00156 729 SMART LRR_typ_2 239 263 IPR003591 -
Trre13g00156 729 Pfam Leucine Rich Repeat 290 308 IPR001611 GO:0005515
Trre13g00156 729 Pfam Leucine Rich Repeat 120 142 IPR001611 GO:0005515
Trre13g00156 729 ProSiteProfiles Protein kinase domain profile. 429 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00156 729 FunFam Leucine-rich repeat receptor protein kinase EMS1 185 269 - -
Trre13g00156 729 FunFam MDIS1-interacting receptor like kinase 2 508 701 - -
Trre13g00156 729 SUPERFAMILY L domain-like 53 334 - -
Trre13g00156 729 ProSitePatterns Protein kinases ATP-binding region signature. 435 457 IPR017441 GO:0005524
Trre13g00156 729 Pfam Leucine rich repeat 168 228 IPR001611 GO:0005515
Trre13g00156 729 Gene3D Phosphorylase Kinase; domain 1 388 507 - -
Trre13g00156 729 ProSitePatterns Tyrosine protein kinases specific active-site signature. 553 565 IPR008266 GO:0004672|GO:0006468
Trre13g00156 729 Gene3D Ribonuclease Inhibitor 287 364 IPR032675 -
Trre13g00156 729 FunFam Nuclear pore complex protein NUP107 22 184 - -
Trre13g00156 729 SUPERFAMILY Protein kinase-like (PK-like) 416 694 IPR011009 -
Trre13g00156 729 Gene3D Ribonuclease Inhibitor 20 186 IPR032675 -
Trre13g00156 729 FunFam Leucine-rich repeat receptor protein kinase MSP1 392 507 - -
Trre13g00156 729 Pfam Protein kinase domain 435 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00156 Trre-Chr13 1208885 1211542 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00156 93 601 Receptor kinase-like Gene Family AT4G08850 39.024 1.43e-106 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre13g00156 Pkinase 4.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00156 - - mtr:25497510 880.937