Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00155 ATGTGGATGGTCTTCGTTCTTATTATTTGGGGTTTGATTGTTGGAACTGAATCTTCTACATTGAGATCTCAACTTAAAATAGAAGAAAACGCTATATTGAATAGTGGATGGTGGAACACTTCTGATTCTCATGCACACTTCAACATCTCCAATCGGTGTAATTGGCCTCAGATATCATGCAACAAGGCTGGAAGCATAACAAAAATCAGCATAGAAGAAATCAGCAACACAATGTTATATCAAAATAGGATTCGCTTTGCAACATTCAACTTGACTGCTTTCCACAATTTAGAAAGCCTTGTTATCATGTTTGCTGGACTAGAAGGGACTATCCCAAAAGAAATTGGTCTTCTCTCTAAGCTTAATTATCTTTATCTGTCTGGAAATTCTCTTGTAGGTAAGATACCTCCTTCACTTGGAAATCTCACAACACTCACTCAGGTTGATCTATCTGAAAATTCTCTTGTAGGTGAGATACCACCTTCACTAGGAAATCTCACAAATCTCACTGATCTTGGTCTATATGGAAATTCCCTTGTAGGTGAGATACCTCCTTCTTTAGGAAATCTCACAAAACTCACTGATCTTTATCTATTTGGAAATTCTCTTGTAGGTGAGATACCTCCTTCTCTAGGCAACCTTAGAAAATTAACTGAGTTAGAAATATCTTCCAACAAGCTTCAAGGTTCCATTCCTCATGAGTTGGGATTCATTAAAACTCTAGTTTCATTAGGTCTATCTGATAACTTCTTTAATGGTAGTTTTCCCATTTCCATCATAGGAAATCTCACACAATTAGAGTACCTGGACATCTCCCACAACACAATTCAAGGCTCCATTCCTTTTGAGTTGGGGTTCTTAAATAATCTGACAACTTTATATCTATCATACAATAGATTCGATAGAAACTTGCCTATTTCCATTACAAATCTCACACAATTAAAAAACCTTGACATTTCCCACAATTTACTCATTGGTACCCTTCCTTCTAATTTTTTCCTATTGGCAAATTATGAACTTTCCATTGACCTCAGTAACAACCTCATCAGTGGTGAAATCCCTTCTCAGTTTGGACATTTTCAAAATCTTAATTTAAGCAATAATAATCTCACTGGATTGATTCCTGCATCTCTCTGTAATGGATATAATATAGACATTTCTAACAATTGTTTGAAGGGTCCCCTTCCGAACTGTTTTGGTTCTATTACAACAATAGTGAATACCAACAATGATGTATGTATCGACACTTCATATAACCATTTCAAACATTGGATACCTCACAAGAAAAACAACAAAGTAATACATGATCTTGTCATTGTTCTTCCTATCATTATTATTCTAATCCTAGCCTTCTCACTTGTCTTGTACTTGAAACTTCGTCATAATTATATGAAGAACAAGCATACAAACAAAACCACTACAAAAAATGGAGATCTTTTTTGTATATGGAATTATGATGGCAAGATAGCACACAATGACATCATCAGAGCAACAGAAGACTTTGACATGAGATATTGTATTGGAACGGGGGCATATGGAAGTGTTTACAAGGCACAGTTACCATCTGGAAAAGTTGTTGCCTTAAAAAAACTTCATGGCTATGAAGCAGAAGTGTCGGCTTTTGATGAGAGTTTTAGAAATGAAGTGAAAATATTATCAGAAATAAAGCACCGACATATTGTGAAGCTTTATGGATTCTGCTTGCACAAAAGAATGATGTATTTGATTTATCATTACATGGAGAAAGGAAGCTTGTTCTCTGTCTTGTATGATGATGTAGAAGCCGTCGAATTCAAATGGAGAAAAAGGGTTAACATTGTTAAAGGAGTTGCATCAGCTCTTTCATATCTTCATCATGATTGCACAACTCCAATAGTGCATAGAGATGTATCGAGTGGCAATATCTTGCTAAACTCTGAGTGGCAGCCTAGTGTCTCTGACTTTGGCACAGCTCGACTCCTTCAATATGATTCATCCAATCGAACAATAGTTGCTGGAACAATCGGATATATAGCTCCTGAGCTTGCTTATACTATGGTTGTGAGTGAAAAGTGTGATGTATATAGTTTTGGAGTAGTGGCACTAGAAACTTTAATGGGAAAGCACCCTCAGGAAATGTTGTCGTCACTTCAGTTAGCATCAACTCAAAGCATGAAATTATGTCAAGTATTAGACCAACGTCTACCATTTCCAAATAATGCGATGGTTTTACATGACATAATTCGTGTAGCCGCAATAGCATTTGCATGCTTACATTTCAATCCTAGCTCTCGACCAACAATGAAATGTGTGTCAGAGTGTTTTGTCCTTGAGCCTCCACCATTAACCATTTCTTTGAGTGAAATTTCAATGCAGCAACTTATGAGTCAAGAATTCAAAGCACTATTTCATATTTTCAACCCATGA 2406 0.3628 MWMVFVLIIWGLIVGTESSTLRSQLKIEENAILNSGWWNTSDSHAHFNISNRCNWPQISCNKAGSITKISIEEISNTMLYQNRIRFATFNLTAFHNLESLVIMFAGLEGTIPKEIGLLSKLNYLYLSGNSLVGKIPPSLGNLTTLTQVDLSENSLVGEIPPSLGNLTNLTDLGLYGNSLVGEIPPSLGNLTKLTDLYLFGNSLVGEIPPSLGNLRKLTELEISSNKLQGSIPHELGFIKTLVSLGLSDNFFNGSFPISIIGNLTQLEYLDISHNTIQGSIPFELGFLNNLTTLYLSYNRFDRNLPISITNLTQLKNLDISHNLLIGTLPSNFFLLANYELSIDLSNNLISGEIPSQFGHFQNLNLSNNNLTGLIPASLCNGYNIDISNNCLKGPLPNCFGSITTIVNTNNDVCIDTSYNHFKHWIPHKKNNKVIHDLVIVLPIIIILILAFSLVLYLKLRHNYMKNKHTNKTTTKNGDLFCIWNYDGKIAHNDIIRATEDFDMRYCIGTGAYGSVYKAQLPSGKVVALKKLHGYEAEVSAFDESFRNEVKILSEIKHRHIVKLYGFCLHKRMMYLIYHYMEKGSLFSVLYDDVEAVEFKWRKRVNIVKGVASALSYLHHDCTTPIVHRDVSSGNILLNSEWQPSVSDFGTARLLQYDSSNRTIVAGTIGYIAPELAYTMVVSEKCDVYSFGVVALETLMGKHPQEMLSSLQLASTQSMKLCQVLDQRLPFPNNAMVLHDIIRVAAIAFACLHFNPSSRPTMKCVSECFVLEPPPLTISLSEISMQQLMSQEFKALFHIFNP 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00155 801 FunFam MDIS1-interacting receptor like kinase 2 580 773 - -
Trre13g00155 801 SUPERFAMILY Protein kinase-like (PK-like) 488 766 IPR011009 -
Trre13g00155 801 Gene3D Phosphorylase Kinase; domain 1 460 579 - -
Trre13g00155 801 ProSitePatterns Protein kinases ATP-binding region signature. 507 529 IPR017441 GO:0005524
Trre13g00155 801 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 66 769 - -
Trre13g00155 801 FunFam Leucine-rich repeat receptor protein kinase MSP1 464 579 - -
Trre13g00155 801 SUPERFAMILY RNI-like 91 441 - -
Trre13g00155 801 FunFam Leucine-rich repeat receptor-like protein kinase TDR 91 380 - -
Trre13g00155 801 Pfam Leucine rich repeat 240 300 IPR001611 GO:0005515
Trre13g00155 801 Gene3D Transferase(Phosphotransferase) domain 1 580 770 - -
Trre13g00155 801 SMART LRR_sd22_2 214 235 - -
Trre13g00155 801 SMART LRR_sd22_2 263 284 - -
Trre13g00155 801 SMART LRR_sd22_2 287 313 - -
Trre13g00155 801 SMART LRR_sd22_2 118 144 - -
Trre13g00155 801 SMART LRR_sd22_2 166 192 - -
Trre13g00155 801 SMART LRR_typ_2 118 142 IPR003591 -
Trre13g00155 801 SMART LRR_typ_2 357 380 IPR003591 -
Trre13g00155 801 SMART LRR_typ_2 166 190 IPR003591 -
Trre13g00155 801 SMART LRR_typ_2 311 335 IPR003591 -
Trre13g00155 801 SMART LRR_typ_2 214 238 IPR003591 -
Trre13g00155 801 SMART LRR_typ_2 287 310 IPR003591 -
Trre13g00155 801 SMART LRR_typ_2 263 284 IPR003591 -
Trre13g00155 801 Pfam Leucine Rich Repeat 120 142 IPR001611 GO:0005515
Trre13g00155 801 Pfam Leucine Rich Repeat 362 380 IPR001611 GO:0005515
Trre13g00155 801 Gene3D Ribonuclease Inhibitor 19 168 IPR032675 -
Trre13g00155 801 ProSitePatterns Tyrosine protein kinases specific active-site signature. 625 637 IPR008266 GO:0004672|GO:0006468
Trre13g00155 801 ProSiteProfiles Protein kinase domain profile. 501 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00155 801 Pfam Protein kinase domain 507 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00155 801 Gene3D Ribonuclease Inhibitor 170 437 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00155 Trre-Chr13 1208885 1211542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00155 90 673 Receptor kinase-like Gene Family AT4G08850 36.834 4.24e-118 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre13g00155 Pkinase 5.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00155 - - mtr:25497510 900.968