Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00146 ATGGGTTATCTTAGAAAAGTTTCCAAAACCTTAAAACAATCAAATTATGTTTCATTATTGTTCAATTTCAATTTCACTCCATTATCAAACAGAATAACCCATCAAAGATTTTCCTTAACACGTGCACTTTTCTGTACCCAATCACGTCAAAATAGTACCAAAGAGAAACCCATTATAGATTTGAGTCAGTATCCTACAGAGCTTGTGAGAAATTTCTCAATCATTGCACATGTTGATCATGGAAAATCTACTCTTGCTGATAGGCTTCTTGAACTCACTGGAACTATTAAGAAAGGACTTGGCCAGCCTCAGTATCTTGATAAATTGCAGGTGGAGAGGGAAAGGGGAATCACGGTTAAAGCTCAGACAGCAACAATGTTTTATAAGAACATCATAAATGGTGATGGAAAAGAGTCACCTAATTATTTGTTGAATCTTATCGACACACCTGGGCATGTAGATTTCAGTTATGAAGTGTCAAGGTCACTAGCTGCTTGTCAGGGTGTGCTTTTGGTTGTTGATGCTGCTCAAGGAGTTCAAGCACAAACCGTTGCTAACTTTTACCTTGCCTTCGAATCTAACTTATCAATTATACCTGTCATAAACAAGATAGATCAGCCAACTGCTGATCCTGACCGTGTTAAAGCGCAATTGAAATCGATGTTTGATCTTGACACGAGTGATGTATTGCTAACATCGGCGAAAACTGGGAAGGGTCTTGAACATGTTCTTCCAGCAGTCATTGAGCGGATACCTCCGCCTCCTGGGAAGAGTGACTCTTCTTTACGTATGCTTTTACTTGATTCATATTTTGACGAATACAGAGGGGTGATATGCCATGTTGCTGTCGTTGATGGTGCCCTGCGCAAGGGGGATAAGATTTCTTCAGCGGCCACTGGTAAATCATACGAAGCTTTAGATATAGGCATCATGCACCCTGAACTCACGCCTACTGGAATCTTGTTTACTGGACAAGTTGGTTACGTTATAAGTGGCATGCGGTCGACCAAAGAGGCGCGCATTGGAGATACAATTTACCATACACGAAGCACTATGGATGTGGAACCTCTTCCAGGCTTCAAACCCGCAAAACATATGGTTTTTTCTGGTCTTTTTCCGGCTGATGGATCTGATTTTGAAGCACTCAACCATGCAATAGAGAAGCTTACATGCAATGATGCCAGTGTCTCTGTTGCGAAAGAAACAAGCACTGCTCTAGGTCTAGGGTTCAGGTGTGGATTTTTAGGCCTTCTTCACATGGATGTTTTTCATCAAAGGCTCGAACAGGAATATGGAGCTCATATTATCTCAACCGTTCCTACCGTGCCTTATATATATGAGTATTCTGATGGAAGCAAATTAGAAGTTCAGAATCCTGCTGCATTACCATCTAATCCCAAGCAACGAGTGGTAGCCTGTTGGGAACCCACAGTAATAGCTACTATAGTTATGCCTAGTGAGTATGTTGGACCTGTTATCACCCTTCTCTCTGAGCGTAGGGGTGAACAGTTGGAGTACTCGTTCATTGACAGTCAACGAGTTTTCATGAAGTATCGTCTTCCTTTGAGGGAAGTTGTTATTGACTTTTATAATGAATTGAAGAGTATAACATCAGGCTATGCATCATTTGATTATGAGGATTCAGATTATCAACAATCTGATCTGGTGAAACTTGATATTCTCTTGAACGGACAACCAGTTGATGCCATGTCAACCATTGTTCATAACTCGAAATCATATCGTGTTGGGCGTGAATTGGTGGATAAATTGAAGAAAGTCATTGACAGGCAAATGTTTGAGATATCCATACAAGCCGCTATTGGGTCAAAAATTATAGCAAGGGAGACTATTACGGCTATGAGAAAAAATGTTCTTGCCAAGTGTTATGGTGGTGATGTTTCACGAAAGAGGAAGCTATTGGAGAAGCAAAAGGAAGGTAAAAAGCGAATGAAACGTGTTGGTTCTGTTGATGTACCACAAGAAGCATTCCATGAACTATTGAAGGTTTCATAG 2013 0.4069 MGYLRKVSKTLKQSNYVSLLFNFNFTPLSNRITHQRFSLTRALFCTQSRQNSTKEKPIIDLSQYPTELVRNFSIIAHVDHGKSTLADRLLELTGTIKKGLGQPQYLDKLQVERERGITVKAQTATMFYKNIINGDGKESPNYLLNLIDTPGHVDFSYEVSRSLAACQGVLLVVDAAQGVQAQTVANFYLAFESNLSIIPVINKIDQPTADPDRVKAQLKSMFDLDTSDVLLTSAKTGKGLEHVLPAVIERIPPPPGKSDSSLRMLLLDSYFDEYRGVICHVAVVDGALRKGDKISSAATGKSYEALDIGIMHPELTPTGILFTGQVGYVISGMRSTKEARIGDTIYHTRSTMDVEPLPGFKPAKHMVFSGLFPADGSDFEALNHAIEKLTCNDASVSVAKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHIISTVPTVPYIYEYSDGSKLEVQNPAALPSNPKQRVVACWEPTVIATIVMPSEYVGPVITLLSERRGEQLEYSFIDSQRVFMKYRLPLREVVIDFYNELKSITSGYASFDYEDSDYQQSDLVKLDILLNGQPVDAMSTIVHNSKSYRVGRELVDKLKKVIDRQMFEISIQAAIGSKIIARETITAMRKNVLAKCYGGDVSRKRKLLEKQKEGKKRMKRVGSVDVPQEAFHELLKVS 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00146 670 Pfam Elongation factor Tu GTP binding domain 69 252 IPR000795 GO:0003924|GO:0005525
Trre13g00146 670 SUPERFAMILY EF-G C-terminal domain-like 474 568 IPR035647 -
Trre13g00146 670 CDD EF4_II 262 347 - -
Trre13g00146 670 CDD EF4_III 365 440 - -
Trre13g00146 670 NCBIfam small GTP-binding protein domain 73 243 IPR005225 GO:0005525
Trre13g00146 670 CDD LepA 70 254 - -
Trre13g00146 670 Pfam GTP-binding protein LepA C-terminus 562 668 IPR013842 -
Trre13g00146 670 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 107 122 IPR031157 -
Trre13g00146 670 Gene3D Elongation Factor G (Translational Gtpase), domain 3 358 439 - -
Trre13g00146 670 FunFam Translation factor GUF1, mitochondrial 358 439 - -
Trre13g00146 670 SUPERFAMILY EF-G C-terminal domain-like 366 443 IPR035647 -
Trre13g00146 670 PANTHER TRANSLATION FACTOR GUF1-RELATED 41 669 IPR006297 GO:0005525
Trre13g00146 670 PRINTS GTP-binding elongation factor signature 71 84 IPR000795 GO:0003924|GO:0005525
Trre13g00146 670 PRINTS GTP-binding elongation factor signature 114 122 IPR000795 GO:0003924|GO:0005525
Trre13g00146 670 PRINTS GTP-binding elongation factor signature 145 155 IPR000795 GO:0003924|GO:0005525
Trre13g00146 670 PRINTS GTP-binding elongation factor signature 197 206 IPR000795 GO:0003924|GO:0005525
Trre13g00146 670 Gene3D - 67 256 IPR027417 -
Trre13g00146 670 CDD lepA_C 475 554 IPR035654 -
Trre13g00146 670 Hamap Elongation factor 4 [lepA]. 65 670 IPR006297 GO:0005525
Trre13g00146 670 Gene3D - 554 628 IPR038363 -
Trre13g00146 670 Gene3D Translation factors 257 354 - -
Trre13g00146 670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 276 IPR027417 -
Trre13g00146 670 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 67 255 IPR000795 GO:0003924|GO:0005525
Trre13g00146 670 SUPERFAMILY Translation proteins 253 352 IPR009000 -
Trre13g00146 670 FunFam Translation factor GUF1, mitochondrial 257 355 - -
Trre13g00146 670 FunFam Translation factor GUF1, mitochondrial 554 628 - -
Trre13g00146 670 FunFam Elongation factor 4 66 256 - -
Trre13g00146 670 Pfam Elongation factor G C-terminus 475 560 IPR000640 -
Trre13g00146 670 Gene3D - 440 553 - -
Trre13g00146 670 NCBIfam translation elongation factor 4 69 669 IPR006297 GO:0005525
Trre13g00146 670 FunFam Translation factor GUF1, mitochondrial 440 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00146 Trre-Chr13 1134039 1139678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00146 69 206 Eukaryotic Initiation Factors Gene Family AT1G56070 40.816 2.93e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00146 K21594 - gmx:100781092 1176.77