Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00145 ATGTCTAGTCCAAGTAGTTCAGAGATTGAAGAGAAGAGAGTTACTTCAATTTTCAATGAAGCTGATTTTTCTACTCAACAAGAGGTTACAAAGGAAGACAAACTAATAGATGCAAAATCCGAAATGGGTGAGGTGAAAGAAGAAAACGAAAGGTTGAAGATGATGCTATCGCGAGTTGAAAAGGACTACAACTCGCTTCAACTCCGTTTCTTCGACATTGTTAACAAAGAAGTTTCTAACAAAGTTGTAGAAGATTCATCGACTTCACATGACGAAATTGATGAAGAACCCGAGCTTGTATCACTTTGCCTTGGAAGAAGTCCAAACGAGTACAAGAAAGAAGCAAAAATTGATCAAAACTCAAACAAACCTAAAGAAAAAGAAGACATGGAAGTTAATCTTAGTCTTGGATTAGACTCCAAATATATGTTGTCTATGGAGTTAGTGTCTGATTTGAGTCCAATGAATAGCTCAGAAGAATTACCAAAGGAAGTTGAAGAAAAAGGAACATTATTGCCATCAACAAATAAATCACCAAAAGTGATAAATGTAGATGATGATTCAGATCAAATGCCAGCTAAGAGAGTTAGAGTATCTGTGAGAGCTAAATGTGACACTCCCACGATGAATGATGGATGTCAATGGAGGAAATATGGACAGAAGATAGCAAAAGGAAATCCATGTCCAAGAGCATACTATCGTTGCACAGTTGCACCAGCATGCCCAGTTAGAAAACAGGTACAAAGATGTGCTGATGACTTGTCCATATTAATCACAACATATGAAGGAACACACAACCATCCTCTTCAAGTTACAGCATCAGCCATGGCATACACAACTTCAGCTGCAGCTTCAATGATGTTATCAGGCTCATCAACATCATCATCATCACATCAAAATATTCAACATCAAAATATTCATCACCAAAATTCCACATCTTTTGGAAATTCTCCAACACTACTCAATGGCCTAAATTTCAACAATAACCACTTTGAACAATCAAGAACACCAAAACAACATTTCTTCATTCCACAAAACCATAATAGTTTGTTCCCAACAATCACTCTTGACCTAACTTCTCCTTCATCCATATCATCAACATCATCAAACATAGCTTCAATTCCAAGATTTTCTCCAAATAATCTTAATTTTTGTTCCACACAACCACCAAATTTCACACCAACATCAACCATTTGGAACAACAACAAATTAGGATTAGGGTTCATTAACAATAACACAATGCATATTGAAAAACCACAAATTAGGCCTTTTAACCATTTCCAAGAAAATTTCTATCAAAATCAAAATTGTGTGACAAATTACCAAACACCTTCAAGGCAAGCATTGGCGGAAACAATTAGCAAAGCAATAAGCACGGATCCAAGTCTTCATTCAGTGATAGCTGCCGCAGTTACATCGATTGTAGGACAAGGATCAAACAATGGTGGAAATCAAGAAGAGTTAAGAGATAATGGTTTAGGTTCAGGATTGAATTTGAAACTTGGTGAGTATCCTCAAATGGTTTCAAACAATTTGTTGAATCAAAATGGGAAAGGATGTTTGAAGGGTTCATACTTCAAAAGGTTGTCACCAACAACAAGTTCACAAGCCAAAAATTTCATGCTTCTTCAACCATCATTGCCAAATTCTCTTTCTAAGAGTAACACAACTAGACCTTCATCCATTGTTAATCATATCAATCATTGTGATCCAAATATGAAGACACATCATTAG 1734 0.3599 MSSPSSSEIEEKRVTSIFNEADFSTQQEVTKEDKLIDAKSEMGEVKEENERLKMMLSRVEKDYNSLQLRFFDIVNKEVSNKVVEDSSTSHDEIDEEPELVSLCLGRSPNEYKKEAKIDQNSNKPKEKEDMEVNLSLGLDSKYMLSMELVSDLSPMNSSEELPKEVEEKGTLLPSTNKSPKVINVDDDSDQMPAKRVRVSVRAKCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPACPVRKQVQRCADDLSILITTYEGTHNHPLQVTASAMAYTTSAAASMMLSGSSTSSSSHQNIQHQNIHHQNSTSFGNSPTLLNGLNFNNNHFEQSRTPKQHFFIPQNHNSLFPTITLDLTSPSSISSTSSNIASIPRFSPNNLNFCSTQPPNFTPTSTIWNNNKLGLGFINNNTMHIEKPQIRPFNHFQENFYQNQNCVTNYQTPSRQALAETISKAISTDPSLHSVIAAAVTSIVGQGSNNGGNQEELRDNGLGSGLNLKLGEYPQMVSNNLLNQNGKGCLKGSYFKRLSPTTSSQAKNFMLLQPSLPNSLSKSNTTRPSSIVNHINHCDPNMKTHH 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00145 577 SMART WRKY_cls 209 269 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g00145 577 MobiDBLite consensus disorder prediction 549 577 - -
Trre13g00145 577 Pfam WRKY DNA -binding domain 210 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g00145 577 SUPERFAMILY WRKY DNA-binding domain 203 269 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g00145 577 Gene3D WRKY domain 194 269 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g00145 577 MobiDBLite consensus disorder prediction 166 187 - -
Trre13g00145 577 ProSiteProfiles WRKY domain profile. 204 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g00145 577 MobiDBLite consensus disorder prediction 549 568 - -
Trre13g00145 577 Coils Coil 35 69 - -
Trre13g00145 577 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 22 485 IPR044810 GO:0003700
Trre13g00145 577 FunFam probable WRKY transcription factor 31 194 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00145 Trre-Chr13 1128987 1132081 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00145 42 476 WRKY Transcription Factor Family AT5G15130 44.685 7.20e-85 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre13g00145 WRKY 5.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00145 - - psat:127130037 861.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00145 13 1128987 1132081 Trre13g00145 13 1128987 1132081 ECH
Trre13g00145 13 1128987 1132081 Trre15g04173 15 52342572 52347517 ECH