Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00144 ATGTCAAAAATGTCTAGTCCAAGTAGTTCAGAGATTGAAGAGAAGAGAGTTACTTCAATTTTCAATGAAGCTGATTTTTCTACTCAACAAGAGGTTACAAAGGAAGACAAACTAATAGATGCAAAATCCGAAATGGGTGAGGTGAAAGAAGAAAACGAAAGGTTGAAGATGATGCTATCGCGAGTTGAAAAGGACTACAACTCGCTTCAACTCCGTTTCTTCGACATTGTTAACAAAGAAGTTTCTAACAAAGTTGTAGAAGATTCATCGACTTCACATGACGAAATTGATGAAGAACCCGAGCTTGTATCACTTTGCCTTGGAAGAAGTCCAAACGAGTACAAGAAAGAAGCAAAAATTGATCAAAACTCAAACAAACCTAAAGAAAAAGAAGACATGGAAGTTAATCTTAGTCTTGGATTAGACTCCAAATATATGTTGTCTATGGAGTTAGTGTCTGATTTGAGTCCAATGAATAGCTCAGAAGAATTACCAAAGGAAGTTGAAGAAAAAGGAACATTATTGCCATCAACAAATAAATCACCAAAAGTGATAAATGTAGATGATGATTCAGATCAAATGCCAGCTAAGAGAGTTAGAGTATCTGTGAGAGCTAAATGTGACACTCCCACGATGAATGATGGATGTCAATGGAGGAAATATGGACAGAAGATAGCAAAAGGAAATCCATGTCCAAGAGCATACTATCGTTGCACAGTTGCACCAGCATGCCCAGTTAGAAAACAGGTACAAAGATGTGCTGATGACTTGTCCATATTAATCACAACATATGAAGGAACACACAACCATCCTCTTCAAGTTACAGCATCAGCCATGGCATACACAACTTCAGCTGCAGCTTCAATGATGTTATCAGGCTCATCAACATCATCATCATCACATCAAAATATTCAACATCAAAATATTCATCACCAAAATTCCACATCTTTTGGAAATTCTCCAACACTACTCAATGGCCTAAATTTCAACAATAACCACTTTGAACAATCAAGAACACCAAAACAACATTTCTTCATTCCACAAAACCATAATAGTTTGTTCCCAACAATCACTCTTGACCTAACTTCTCCTTCATCCATATCATCAACATCATCAAACATAGCTTCAATTCCAAGATTTTCTCCAAATAATCTTAATTTTTGTTCCACACAACCACCAAATTTCACACCAACATCAACCATTTGGAACAACAACAAATTAGGATTAGGGTTCATTAACAATAACACAATGCATATTGAAAAACCACAAATTAGGCCTTTTAACCATTTCCAAGAAAATTTCTATCAAAATCAAAATTGTGTGACAAATTACCAAACACCTTCAAGGCAAGCATTGGCGGAAACAATTAGCAAAGCAATAAGCACGGATCCAAGTCTTCATTCAGTGATAGCTGCCGCAGTTACATCGATTGTAGGACAAGGATCAAACAATGGTGGAAATCAAGAAGAGTTAAGAGATAATGGTTTAGGTTCAGGATTGAATTTGAAACTTGGTGAGTATCCTCAAATGGTTTCAAACAATTTGTTGAATCAAAATGGGAAAGGATGTTTGAAGGGTTCATACTTCAAAAGGTTGTCACCAACAACAAGTTCACAAGCCAAAAATTTCATGCTTCTTCAACCATCATTGCCAAATTCTCTTTCTAAGAGTAACACAACTAGACCTTCATCCATTGTTAATCATATCAATCATTGTGATCCAAATATGAAGACACATCATTAG 1743 0.3592 MSKMSSPSSSEIEEKRVTSIFNEADFSTQQEVTKEDKLIDAKSEMGEVKEENERLKMMLSRVEKDYNSLQLRFFDIVNKEVSNKVVEDSSTSHDEIDEEPELVSLCLGRSPNEYKKEAKIDQNSNKPKEKEDMEVNLSLGLDSKYMLSMELVSDLSPMNSSEELPKEVEEKGTLLPSTNKSPKVINVDDDSDQMPAKRVRVSVRAKCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPACPVRKQVQRCADDLSILITTYEGTHNHPLQVTASAMAYTTSAAASMMLSGSSTSSSSHQNIQHQNIHHQNSTSFGNSPTLLNGLNFNNNHFEQSRTPKQHFFIPQNHNSLFPTITLDLTSPSSISSTSSNIASIPRFSPNNLNFCSTQPPNFTPTSTIWNNNKLGLGFINNNTMHIEKPQIRPFNHFQENFYQNQNCVTNYQTPSRQALAETISKAISTDPSLHSVIAAAVTSIVGQGSNNGGNQEELRDNGLGSGLNLKLGEYPQMVSNNLLNQNGKGCLKGSYFKRLSPTTSSQAKNFMLLQPSLPNSLSKSNTTRPSSIVNHINHCDPNMKTHH 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00144 580 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 25 487 IPR044810 GO:0003700
Trre13g00144 580 MobiDBLite consensus disorder prediction 552 571 - -
Trre13g00144 580 Coils Coil 38 72 - -
Trre13g00144 580 ProSiteProfiles WRKY domain profile. 207 273 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g00144 580 Gene3D WRKY domain 197 272 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g00144 580 SMART WRKY_cls 212 272 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g00144 580 MobiDBLite consensus disorder prediction 552 580 - -
Trre13g00144 580 MobiDBLite consensus disorder prediction 169 190 - -
Trre13g00144 580 FunFam probable WRKY transcription factor 31 197 274 - -
Trre13g00144 580 SUPERFAMILY WRKY DNA-binding domain 206 272 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g00144 580 Pfam WRKY DNA -binding domain 213 271 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00144 Trre-Chr13 1128978 1132081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00144 45 479 WRKY Transcription Factor Family AT5G15130 44.685 5.67e-85 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre13g00144 WRKY 5.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00144 - - psat:127130037 857.825