Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00137 ATGGCAATGTTGATAGAGAATGAAGTCGTGTCTTTGAGAAAGAATATGGAAGAAAAAGATGTAAAAGGATCACGTTGTGTTAAGAGAAAAAGAAGAGAACATGCTATTGGACCAATCATAGATGATGATGATAACCACAACAAGAAGATGATAAAACAACATGTTGGTGAAAATTCTACAACTAACACAACAAAGAGAAGCTCAAGATTTCGTGGTGTTAGCAGGCATAGATGGACTGGTCGATTTGAAGCTCACTTATGGGACAAGCTTTCATGGAACATAACACAAAAGAAGAAAGGAAAACAAGGGGCTTATGATGAAGAAGAATCTGCTGCAAGAGCATATGATTTAGCTGCACTTAAGTATTGGGGAACATCAACTTTCACTAATTTTCAGATATCAGATTATGAAAAAGAGATAGAAATTATGAAAACCATGACCAAAGAAGAGTACTTGGCCACATTAAGAAGAAAGAGTAGTGGCTTTTCAAGAGGTGTCTCAAAGTATAGAGGTGTTGCAAGGCACCACCATAATGGTAGATGGGAAGCAAGGATAGGGAGAGTTTTTGGAAACAAATATCTTTATCTTGGAACCTATAGTACACAAGAAGAAGCTGCACGTGCTTATGACATAGCTGCAATTGAATACAGAGGAATTCATGCTGTAACCAACTTTGAATTAAGTAGTTACATAAAATGGTTAAAGCCAGAAAGTGATAAAGAAGAAAAACATGAATCACAAGCACTACCAAAAGAGTCACAACCAATGGAATCTCCAAATAATTCTACTCTATTACAAGAGACTAAGTTATTAGCCCTACAAAAGAGCTTTTTCATTCCAAATTACATTAATTCCAACGAAAAGCAAGAATCTTCATCTTCGTTTGAAAGCAAAAACTATCATTTCTTGGGCAACAAGTCAACTTCTCCAACCGCGCTTAGTCTTCTCCTTCGCTCTTCGTTATTTAGAGAATTACTTGAAAAGAATTCAAATGTATCCGAGGATGAAGTCACGAGTGAGCAACATCAAAATCAACAACCTAGCGATGATGAACTAGGAGGGACCTTCTACGATGGTATTGACAACATCTCATTTGACTTTGATCCTAATATATGCAACATAGAATTGCAAGAAAGAGACTTGCATTCAATATTTTGTACATAA 1164 0.3608 MAMLIENEVVSLRKNMEEKDVKGSRCVKRKRREHAIGPIIDDDDNHNKKMIKQHVGENSTTNTTKRSSRFRGVSRHRWTGRFEAHLWDKLSWNITQKKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFQISDYEKEIEIMKTMTKEEYLATLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGIHAVTNFELSSYIKWLKPESDKEEKHESQALPKESQPMESPNNSTLLQETKLLALQKSFFIPNYINSNEKQESSSSFESKNYHFLGNKSTSPTALSLLLRSSLFRELLEKNSNVSEDEVTSEQHQNQQPSDDELGGTFYDGIDNISFDFDPNICNIELQERDLHSIFCT 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00137 387 PRINTS Ethylene responsive element binding protein signature 208 228 IPR001471 GO:0003700|GO:0006355
Trre13g00137 387 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Trre13g00137 387 Pfam AP2 domain 167 218 IPR001471 GO:0003700|GO:0006355
Trre13g00137 387 Pfam AP2 domain 68 124 IPR001471 GO:0003700|GO:0006355
Trre13g00137 387 SMART rav1_2 168 232 IPR001471 GO:0003700|GO:0006355
Trre13g00137 387 SMART rav1_2 69 138 IPR001471 GO:0003700|GO:0006355
Trre13g00137 387 MobiDBLite consensus disorder prediction 332 353 - -
Trre13g00137 387 ProSiteProfiles AP2/ERF domain profile. 168 226 IPR001471 GO:0003700|GO:0006355
Trre13g00137 387 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 52 296 - -
Trre13g00137 387 FunFam AP2-like ethylene-responsive transcription factor 167 228 - -
Trre13g00137 387 SUPERFAMILY DNA-binding domain 167 227 IPR016177 GO:0003677
Trre13g00137 387 CDD AP2 167 228 IPR001471 GO:0003700|GO:0006355
Trre13g00137 387 Gene3D AP2/ERF domain 167 228 IPR036955 GO:0003700|GO:0006355
Trre13g00137 387 Gene3D AP2/ERF domain 68 134 IPR036955 GO:0003700|GO:0006355
Trre13g00137 387 SUPERFAMILY DNA-binding domain 68 133 IPR016177 GO:0003677
Trre13g00137 387 MobiDBLite consensus disorder prediction 336 351 - -
Trre13g00137 387 CDD AP2 68 134 IPR001471 GO:0003700|GO:0006355
Trre13g00137 387 MobiDBLite consensus disorder prediction 241 261 - -
Trre13g00137 387 ProSiteProfiles AP2/ERF domain profile. 69 132 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00137 Trre-Chr13 1071505 1074260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00137 65 230 AP2-EREBP Transcription Factor Family AT5G57390 68.047 5.32e-79 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Trre13g00137 AP2 1.4e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00137 - - gmx:100792612 489.574