Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00136 ATGGCTGGATTTGGAAGTAAGATTGCCTTTATTTTCTTGGTTTTTGCCATTACTATTCCATGTCTTGATGCTGGTATTGCTGAGTTTGATGACTATCTTAAAGGGCAAGCCCAATTAGCTCGCGAAATTGCTCTTAAGTCCTATGTGCCTAATCCTGAAAACATTACAACTGATCTCAATCTACATGTTCACATGGCAATGCAAGAGTCAATGCAAGAGGAAATGGAAGAGGAAATGTCTTTCAATAGCACAAGAAGGGAACTAAGAGGTAGACGTGGTAGAGGCGGTCATCATCGCGGTAGAGGATGCATGTCCACCAATCCAATTGACCGTTGTTGGAGGTGTAGAAAAGATTGGGCCCAAAACCGTCAATTGTTAGCCAGATGTGGAAAAGGTTTTGGTAGAAAGGCCGTAGGAGGACTTGGTGGGAAGTTTTATGTTGTCACCGATCCATCCGACAATGATATGGTGAACCCAAAACCTGGTACTCTCCGTTATGGTGTTGTTCAAAAGGGACCACTTTGGATCATTTTCGCACGTAGCATGGTCATTAGATTGAATCAAGAGTTGCTAGTTTCATCCGACAAGACCATCGACGGTCGTGGAGCCAATGTGCATATTAGAGACGGTGCTGGTATTACTATGCAGTTTGTGAACAATGTCATCATTCACGGTCTTCACATAAAGAATGTTAAGGCTGCGAATGGTGGTATGATTAGAGACTCTTTTGATCATGTTGGACTTAGAACAAGGAGCGATGGCGATGCTATCTCTGTCTATGGTTCATCAAACATCTGGATTGATCATATTTCCTTATCTGAATGTGAGGATGGTCTTGTTGATGTTATTTATGGCTCTACCGCAGTCACAATATCAAATTGCCACTTGACCAAACATAATGATGTTATGTTGTTTGGAGCTAGTGATACATTTTCAGATGACAAGATTATGCAAATTACAGTTGCATTCAACCATTTTGGACAAGGATTAATCCAAAGAATGCCAAGGTGTAGATGGGGATTTTTCCATGTTTTGAACAATGATTACACACATTGGATTATGTATGCAATTGGTGGTAGTTCAGGACCAACAATTCTTAGTCAAGGAAACCGTTTCATTGCTCCTGACAACAATGCTGCAAAAATAGTTACACATAGAGATTATGCATCACAAGATGTTTGGTCAAAATGGCAATGGACATCACAAGATGATTTTTTCATGAATGGTGCACAATTTATTCAATCTGGTTCTCCTATTAGTAATCTTCCATTCAAAAAAGGATATTTGATGAAACCAAGACATGGTAGAGAAGCTAATAGGCTTACAAGGTTTGCTGGGGCACTCAATTGCATTGTGGGTAGGCCTTGCTAG 1371 0.4041 MAGFGSKIAFIFLVFAITIPCLDAGIAEFDDYLKGQAQLAREIALKSYVPNPENITTDLNLHVHMAMQESMQEEMEEEMSFNSTRRELRGRRGRGGHHRGRGCMSTNPIDRCWRCRKDWAQNRQLLARCGKGFGRKAVGGLGGKFYVVTDPSDNDMVNPKPGTLRYGVVQKGPLWIIFARSMVIRLNQELLVSSDKTIDGRGANVHIRDGAGITMQFVNNVIIHGLHIKNVKAANGGMIRDSFDHVGLRTRSDGDAISVYGSSNIWIDHISLSECEDGLVDVIYGSTAVTISNCHLTKHNDVMLFGASDTFSDDKIMQITVAFNHFGQGLIQRMPRCRWGFFHVLNNDYTHWIMYAIGGSSGPTILSQGNRFIAPDNNAAKIVTHRDYASQDVWSKWQWTSQDDFFMNGAQFIQSGSPISNLPFKKGYLMKPRHGREANRLTRFAGALNCIVGRPC 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00136 456 PANTHER PECTATE LYASE 18-RELATED 42 454 IPR045032 GO:0030570
Trre13g00136 456 Pfam Pectate lyase 190 372 IPR002022 -
Trre13g00136 456 SMART amb_all 181 378 IPR002022 -
Trre13g00136 456 Gene3D - 106 449 IPR012334 -
Trre13g00136 456 PRINTS Pollen allergen Amb family signature 129 146 IPR018082 -
Trre13g00136 456 PRINTS Pollen allergen Amb family signature 189 205 IPR018082 -
Trre13g00136 456 PRINTS Pollen allergen Amb family signature 153 178 IPR018082 -
Trre13g00136 456 PRINTS Pollen allergen Amb family signature 427 450 IPR018082 -
Trre13g00136 456 PRINTS Pollen allergen Amb family signature 397 421 IPR018082 -
Trre13g00136 456 PRINTS Pollen allergen Amb family signature 253 274 IPR018082 -
Trre13g00136 456 PRINTS Pollen allergen Amb family signature 355 374 IPR018082 -
Trre13g00136 456 PRINTS Pollen allergen Amb family signature 333 352 IPR018082 -
Trre13g00136 456 Pfam Pectate lyase, N terminus 26 88 IPR007524 GO:0030570
Trre13g00136 456 SUPERFAMILY Pectin lyase-like 107 447 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00136 Trre-Chr13 1068804 1070716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00136 6 456 Polysaccharide Lyase AT5G15110 55.342 0.0 529
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00136 K01728 - gmx:100780236 670.233