Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00131 ATGGGGTTTAGGAATAATGCAATTCAAGCAGGGAGTTTGGATGTGGGGGGGAAGTCAAAGGGAAAGGGAAAGATGAAGAGAGATGGTGATGAGAAGGAAATTGGGTGTTGTGTTAAATTTAGTTGCTTTGGAAAGTGTATACCTTCAAGATTAAAGGTTGATACTTCCAAAAATGGCACCACAAGTGCTCATAATGTGGAAAAACCATCTGTTAATGAGAAAAGCAAAAAGGAAAAAATTGGTCCACCGGGATCGTCTACAACTAGTAATGCGGAAAGTGTCCCTTCAACTCCAAAGTTCAGTGAGGAATTGAAGGTTTCTTCTCATTTGAGAAAATTCACATTCATTGAGCTAAAGATGGCAACTCGGAATTTTCGACCCGAGAGTCTTCTTGGTGAGGGAGGATTCGGTTGTGTTTTCAAAGGTTGGATTGAGGAGAACGGAACTGCACCTGTGAAACCAGGTACTGGACTTACCGTCGCGGTCAAGACCCTCAACCATGATGGACTTCAAGGTCACAAAGAGTGGCTTGCTGAGTTAGACATTCTCGGTGATATTGTCCACCCGAATCTAGTTAAATTGATTGGTTTCTGTATTGAAGATGACCAAAGATTATTGGTTTATCAGTTTATGCCGCGTGGAAGTTTGGAGAACCACCTCTTCAGAAAAGGGTCCTTGCCACTTCCTTGGTCTATTAGAATGAAAATTGCGCTCGGTGCCGCAAAAGGTCTTCATTTTCTCCATGAAGAAGCTCAAAGGCCTATAATTTATCGTGATTTCAAGACATCTAATATTCTATTAGATGCGGAATACAATGCAAAGCTCTCTGATTTTGGACTTGCGAAAGATGGTCCTCAAGGGGAAAATACACATATATCAACAAGAGTTATGGGAACTTATGGTTATGCAGCTCCCGAGTATGTTATGACTGGTCATTTGACATCAAAAAGTGACGTTTACAGTTTTGGAGTAGTGCTACTTGAAATGCTCACTGGTCGACGAGCTGTTGATAAGAATAGACCAAATGGGGAACACAATCTTGTAGAGTGGGCGAGACCTGTACTTGGAGAACGGAGATTGTTATTCCAAATAATTGATCCTCGTCTTGAAGGTCACTTCTCGATCAAAGGAGCACAGAAAGCCGCCCAACTAGCCGCACAATGCCTTAGCCGTGATCCAAAAGTCAGACCTATGATGAGTGAAGTTGTCCAAGCTCTAAAGCCTTTGCAAAACCTCAAGGATATGGCTATCACATCATATCACTTTCAGGTAGTGCGCGTAGATCGTACCATGTCCATGCCTAATTCAAAAAATGGTACACAAACACAATTAGCATCTTTGTCGAAGAAAGGTCAACCTATGAGGATATTGGCGAGTCCAAATGGTCAACACGGTTCTCCTTATCATCATTATATCAAGTCACCAAAACCTAAACATGGATAA 1443 0.4186 MGFRNNAIQAGSLDVGGKSKGKGKMKRDGDEKEIGCCVKFSCFGKCIPSRLKVDTSKNGTTSAHNVEKPSVNEKSKKEKIGPPGSSTTSNAESVPSTPKFSEELKVSSHLRKFTFIELKMATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAELDILGDIVHPNLVKLIGFCIEDDQRLLVYQFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLHFLHEEAQRPIIYRDFKTSNILLDAEYNAKLSDFGLAKDGPQGENTHISTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRAVDKNRPNGEHNLVEWARPVLGERRLLFQIIDPRLEGHFSIKGAQKAAQLAAQCLSRDPKVRPMMSEVVQALKPLQNLKDMAITSYHFQVVRVDRTMSMPNSKNGTQTQLASLSKKGQPMRILASPNGQHGSPYHHYIKSPKPKHG 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00131 480 ProSitePatterns Protein kinases ATP-binding region signature. 131 163 IPR017441 GO:0005524
Trre13g00131 480 MobiDBLite consensus disorder prediction 458 480 - -
Trre13g00131 480 CDD STKc_IRAK 131 409 - -
Trre13g00131 480 FunFam Probable serine/threonine-protein kinase PBL8 211 425 - -
Trre13g00131 480 FunFam Serine/threonine-protein kinase BIK1 92 210 - -
Trre13g00131 480 MobiDBLite consensus disorder prediction 81 101 - -
Trre13g00131 480 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Trre13g00131 480 SUPERFAMILY Protein kinase-like (PK-like) 99 406 IPR011009 -
Trre13g00131 480 MobiDBLite consensus disorder prediction 1 29 - -
Trre13g00131 480 MobiDBLite consensus disorder prediction 54 68 - -
Trre13g00131 480 PANTHER OS01G0588500 PROTEIN-RELATED 80 410 - -
Trre13g00131 480 Gene3D Phosphorylase Kinase; domain 1 105 210 - -
Trre13g00131 480 MobiDBLite consensus disorder prediction 54 101 - -
Trre13g00131 480 Gene3D Transferase(Phosphotransferase) domain 1 211 428 - -
Trre13g00131 480 ProSiteProfiles Protein kinase domain profile. 125 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00131 480 Pfam Protein kinase domain 128 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00131 Trre-Chr13 1050389 1053126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00131 40 422 Glycoside Hydrolase AT3G07070 47.558 5.08e-116 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre13g00131 Pkinase 3.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00131 - - gmx:100305393 825.083