Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00116 ATGAGCCGTAGAGTGAGGAGGAAAGTGGCAAGGAAAGGCAAAGGTAATGTGGTTTCGAGTTTCCCTGAAATTCAAGACGAGGTTGCGGATTTGGAGCCTCAAGGTATTGTTGATTGGAGGAGTTTACCTGATGATACAGTAATTCAGCTATTGTCATGTCTGAGTTATCGAGACCGAGCTAGTTTATCAGCAAGTTGTAAGACATGGAGGGTTCTTGGTAACTCCCCGTGTTTGTGGACTTCTTTGGATCTTCGTTCACACAAGTTTGATGCCAATGTTGCATCTTTACTTGCTTCTAGATGTGTGCATCTTCAGAAGCTTAGGTTTCGTGGTGCAGAGGCTGCTGAGGCACTACTTCATCTTCGAGCTAAGAACTTGCGCGAATTAAGCGGTGACGGTTGCAGGAAGATGACTGATGCAACTCTTGCTGTGATTGCTGCCCGGCATGAGTCACTTCAGAGTCTTCAGCTTGGACCAGATTTTTGTGACAAAGTTACTAGTGATGCTATAAAAGCAATAGCTCACTGCTGTCCTAATTTGAATAAACTCAGGCTCTCAGGCATTAGGGACGTAAATGCTGATGCAATTAATGCATTGGCTGCCTATTGTCCAAAGTTGACTGATATCGGGTTCATCGACTGTCTGAGTGTTGACGAGCTTGCATTGGGAAATGTGCAATCGGCTCGTTTCCTTTCTGTTGCGGGGACACCAAGTATGAAGTGGAGTGTGGTTTCACATCTTTGGCACAAGCTTCCTAACCTGATTGGATTAGATGTTTCAAGAACCGATATTGGTCCGTCTGCTGTTTCAAGATTGTTATCTTCATCACCAAATTTGAAGATTTTGATTGCTTTGAATTGTCCTATGCTCGAAGAAGAGACTAGCTTTTCTGCTAGTAAATATAAAAACAAGTTGTTGATTTCCCTATCAACGGATATTTTTAAAGGACTAGGTTCTTTATTTTTCGATAATACAAATAGAGGAAAAAATGTGTTTTTGGACTGGAGGACTTCAAAGAGTAATAATGATAAGGGCCTTGATGAAATTATACCTTGGCTTGAATGGATGCTATCACATATACTTTTGCGATCTGCTGAGAGTCCTCAACAGGGAGGTCTTGATAATTTCTGGGTTGAACAAGGGGCGTCACTTTTGCTTAGTCTAATGCAGAGTTCTCAAGAGGATGTTCAGGAGAGGGCAGCCACAGGCCTTGCAACTTTTGTTGTAATTGATGATGAAAATGCTAGCATCGATTGTGGAAGAGCTGAAGCAGTTATGCGAGATGGTGGTATACGCCTCCTTCTTGGACTTGCAAAATCTTACAGGGAAGGGCTTCAGTCTGAGGCAGCTAAGGCTATTGCGAATTTGTCTGTGAATGCCAATGTGGCGAAGGCGGTTGCAGAAGAGGGTGGGATTGAGATTCTCGCTAGTTTGGCCAGGTCAATGAACAAACTGGTGGCTGAAGAAGCTGCTGGAGGATTATGGAATCTCTCTGTTGGAGAAGAGCACAAGGGTGCCATTGCTGAAGCTGGTGGAGTACAAGCGTTAGTGGATCTTATATTCAAGTGGTCCTCTACTGGAGATGGAGTTTTAGAACGTGCAGCTGGTGCATTGGCTAATTTGGCTGCTGACGACAAGTGTAGTACAGAGGTTGCACTAGCAGGAGGCGTACATGCTCTAGTGATGCTTGCACGTAACTGTAAATACGAGGGAGTGCAAGAGCAGGCTGCTCGTGCATTGGCTAACTTAGCTGCTCATGGAGATAGCAACAGTAACAATGCCGCTGTCGGACAAGAAGCGGGTGCTCTTGAGGCTCTTGTTCAACTTACACGTTCTCCCCATGAGGGTGTCAGGCAAGAAGCTGCTGGTGCACTTTGGAATTTGTCATTTGACGATAGAAATCGAGAGGCCATTGCAGCAGCTGGCGGCGTTCAAGCTTTGGTTGCTCTTGCCCAATCTTGTTCTAATGCTTCCCCTGGACTTCAAGAGAGGGCTGCTGGTGCTCTATGGGGATTGTCAGTTTCTGAAGCCAATAGCATTGCCATTGGACGAGAAGGAGGAGTTGCACCTCTGATTGCACTGGCACGGTCCGAAGCAGAGGATGTTCATGAAACGGCTGCAGGAGCACTATGGAATCTTGCTTTCAACCCTGGTAATGCTTTACGAATAGTTGAAGAAGGCGGAGTAGCTGCACTTGTTGATCTTTGTTCTTCATCTGTGTCAAAAATGGCACGGTTTATGGCGGCATTGGCTTTGGCCTACATGTTTGATGGGAGAATGGATGAATTCGCTTTAGTCGGCACCTTGTCAGAGAGTGTTTCTAAGAGTGTGGGCCTGGATGGAGCCAGAAGAATGGCTCTGAAACACATTGAAACATTCGTCCGTATGTTTTCTAATCAACAAGCATTTGCGGCTGCTGCTGCATCATCAGCTCCTGCAGCACTTGCACAGGTTACTGAAAGCGCTCGTATTCAAGAAGCGGGACATCTTAGATGCAGTGGTGCTGAAGTTGGAAGATTTGTTACTATGCTACGAAATCCGTCGTCAATACTCAAAGCTTGTGCAGCATTTGCTCTTCTACAGTTTACAATTCCTGGTGGACGACATGCTGTACACCATGCAAGCCTCATGCAGAATGCAGGTGCAGCGAGAGTTCTGCGAAGTGCAGCTGCTGCAGCAACCGCGCCTCTTGAAGCAAAAATCTTTGCCAGGATTGTTCTTCGTAATCTCGAGTATCACCACCTAGAGCATACTGTTTAG 2760 0.4576 MSRRVRRKVARKGKGNVVSSFPEIQDEVADLEPQGIVDWRSLPDDTVIQLLSCLSYRDRASLSASCKTWRVLGNSPCLWTSLDLRSHKFDANVASLLASRCVHLQKLRFRGAEAAEALLHLRAKNLRELSGDGCRKMTDATLAVIAARHESLQSLQLGPDFCDKVTSDAIKAIAHCCPNLNKLRLSGIRDVNADAINALAAYCPKLTDIGFIDCLSVDELALGNVQSARFLSVAGTPSMKWSVVSHLWHKLPNLIGLDVSRTDIGPSAVSRLLSSSPNLKILIALNCPMLEEETSFSASKYKNKLLISLSTDIFKGLGSLFFDNTNRGKNVFLDWRTSKSNNDKGLDEIIPWLEWMLSHILLRSAESPQQGGLDNFWVEQGASLLLSLMQSSQEDVQERAATGLATFVVIDDENASIDCGRAEAVMRDGGIRLLLGLAKSYREGLQSEAAKAIANLSVNANVAKAVAEEGGIEILASLARSMNKLVAEEAAGGLWNLSVGEEHKGAIAEAGGVQALVDLIFKWSSTGDGVLERAAGALANLAADDKCSTEVALAGGVHALVMLARNCKYEGVQEQAARALANLAAHGDSNSNNAAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVQALVALAQSCSNASPGLQERAAGALWGLSVSEANSIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVAALVDLCSSSVSKMARFMAALALAYMFDGRMDEFALVGTLSESVSKSVGLDGARRMALKHIETFVRMFSNQQAFAAAAASSAPAALAQVTESARIQEAGHLRCSGAEVGRFVTMLRNPSSILKACAAFALLQFTIPGGRHAVHHASLMQNAGAARVLRSAAAAATAPLEAKIFARIVLRNLEYHHLEHTV 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00116 919 SUPERFAMILY RNI-like 64 294 - -
Trre13g00116 919 Pfam Armadillo/beta-catenin-like repeat 631 673 IPR000225 GO:0005515
Trre13g00116 919 Pfam Armadillo/beta-catenin-like repeat 554 585 IPR000225 GO:0005515
Trre13g00116 919 Pfam Armadillo/beta-catenin-like repeat 593 629 IPR000225 GO:0005515
Trre13g00116 919 Pfam Armadillo/beta-catenin-like repeat 677 714 IPR000225 GO:0005515
Trre13g00116 919 Pfam Armadillo/beta-catenin-like repeat 464 498 IPR000225 GO:0005515
Trre13g00116 919 Pfam Armadillo/beta-catenin-like repeat 501 543 IPR000225 GO:0005515
Trre13g00116 919 FunFam Protein ARABIDILLO 2 355 503 - -
Trre13g00116 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 601 643 IPR000225 GO:0005515
Trre13g00116 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 642 687 IPR000225 GO:0005515
Trre13g00116 919 SUPERFAMILY ARM repeat 377 746 IPR016024 -
Trre13g00116 919 Gene3D Ribonuclease Inhibitor 32 311 IPR032675 -
Trre13g00116 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 555 586 IPR000225 GO:0005515
Trre13g00116 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 511 556 IPR000225 GO:0005515
Trre13g00116 919 Gene3D - 526 589 IPR011989 -
Trre13g00116 919 Gene3D - 590 762 IPR011989 -
Trre13g00116 919 Gene3D - 369 525 IPR011989 -
Trre13g00116 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 470 512 IPR000225 GO:0005515
Trre13g00116 919 SMART arm_5 631 674 IPR000225 GO:0005515
Trre13g00116 919 SMART arm_5 675 715 IPR000225 GO:0005515
Trre13g00116 919 SMART arm_5 716 757 IPR000225 GO:0005515
Trre13g00116 919 SMART arm_5 418 458 IPR000225 GO:0005515
Trre13g00116 919 SMART arm_5 500 543 IPR000225 GO:0005515
Trre13g00116 919 SMART arm_5 544 585 IPR000225 GO:0005515
Trre13g00116 919 SMART arm_5 459 499 IPR000225 GO:0005515
Trre13g00116 919 SMART arm_5 590 630 IPR000225 GO:0005515
Trre13g00116 919 ProSiteProfiles F-box domain profile. 36 82 IPR001810 GO:0005515
Trre13g00116 919 PANTHER PROTEIN ARABIDILLO 1 1 916 - -
Trre13g00116 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 686 728 IPR000225 GO:0005515
Trre13g00116 919 SMART fbox_2 42 82 IPR001810 GO:0005515
Trre13g00116 919 Pfam F-box-like 39 85 IPR001810 GO:0005515
Trre13g00116 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 429 471 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00116 Trre-Chr13 895026 907581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00116 572 759 U-box Gene Family AT2G23140 35.979 6.44e-20 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00116 - - ccaj:109792060 1510.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00116 13 895026 907581 Trre13g00116 13 895026 907581 ECH