Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00115 ATGGATCCCTTCAAAGGTCAAGGTGGCATTCAAATGCTTCTAACTGCTGAACAAGAAGCCCAACACATTGTTTCCAATGCAAGAAATTTAAGGACTCAAAGGTTGAAGCAAGCGAAAGACGAGGCTGAGAAGGAGGCAGCTCAATACAGATCTCAAATGGAAGAAGAATATCAAAAGTCACTTTCAGAGACAACTGGGAACTCTGGATCAAATGTTAAAAGGCTTGACCAAGAGACAGATGCTAAGATTAGAGGCTTAAAGAAATCAGGTTCAAAGGTCTCAACAGAAGTTGTTGACATGCTACTCAAGTATATCACAAATATTAAAACGTAA 333 0.3934 MDPFKGQGGIQMLLTAEQEAQHIVSNARNLRTQRLKQAKDEAEKEAAQYRSQMEEEYQKSLSETTGNSGSNVKRLDQETDAKIRGLKKSGSKVSTEVVDMLLKYITNIKT 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00115 110 Coils Coil 32 59 - -
Trre13g00115 110 MobiDBLite consensus disorder prediction 53 74 - -
Trre13g00115 110 SUPERFAMILY F1F0 ATP synthase subunit B, membrane domain 11 58 IPR028987 -
Trre13g00115 110 MobiDBLite consensus disorder prediction 35 92 - -
Trre13g00115 110 NCBIfam V-type ATPase subunit G 8 109 IPR005124 GO:0016471|GO:0046961|GO:1902600
Trre13g00115 110 MobiDBLite consensus disorder prediction 75 89 - -
Trre13g00115 110 Pfam Vacuolar (H+)-ATPase G subunit 7 109 IPR005124 GO:0016471|GO:0046961|GO:1902600
Trre13g00115 110 Gene3D - 3 110 - -
Trre13g00115 110 FunFam V-type proton ATPase subunit G 3 110 - -
Trre13g00115 110 PANTHER VACUOLAR ATP SYNTHASE SUBUNIT G 1 109 IPR005124 GO:0016471|GO:0046961|GO:1902600
Trre13g00115 110 MobiDBLite consensus disorder prediction 35 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00115 Trre-Chr13 890177 891632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00115 1 109 Primary Pumps ATPases(2) AT3G01390 57.798 1.00e-34 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00115 K02152 - mtr:25497458 188.348