Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00110 ATGAATATGGATAACCAAAGAAAGAAATCCTCAGGGCGCAAGAAGATTGAGATCAAGAAGCTTGACAAACAATCCAACAAACAAGTCACGTTCTCGAAAAGAAGACAAGGTTTGTTCAGAAAAGCAAGCGAACTTTGCGTTTTATGTGACGTTCATGCGGCCATCATTGTATTTTCTCCCGCCAATAACCTATACTGTTTCGGTCAACCAAATACAGACGCAATCGTTGATAGCTATGTAAGAGGAACCACTGAGTTCGAGGATTTAAAGACGGCAGAAAATTCAGAGAACTACAAAGTGTACAATAAACAATATGAAGAGGCGTTGAAGATGTTGGAATTAGAAAAGAAGAAACTTGCAGATGCTGAAAATTTGGCTAAGTTTTGGAACACATATGATTGGTGGAATGATTCAATTGATGATATGAGTTGTGATCAACTTGAGCAATTCATGGTGTCCATTTATGAATTAAGGAATAAGCTAATTGAAAGGGTAGATGAACCTAACATGTAG 513 0.3743 MNMDNQRKKSSGRKKIEIKKLDKQSNKQVTFSKRRQGLFRKASELCVLCDVHAAIIVFSPANNLYCFGQPNTDAIVDSYVRGTTEFEDLKTAENSENYKVYNKQYEEALKMLELEKKKLADAENLAKFWNTYDWWNDSIDDMSCDQLEQFMVSIYELRNKLIERVDEPNM 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00110 170 SUPERFAMILY SRF-like 12 83 IPR036879 GO:0003677|GO:0046983
Trre13g00110 170 FunFam Agamous-like MADS-box protein AGL62 23 88 - -
Trre13g00110 170 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Trre13g00110 170 Coils Coil 95 125 - -
Trre13g00110 170 PANTHER MADS BOX PROTEIN 13 161 - -
Trre13g00110 170 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Trre13g00110 170 Gene3D - 23 108 IPR036879 GO:0003677|GO:0046983
Trre13g00110 170 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Trre13g00110 170 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Trre13g00110 170 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Trre13g00110 170 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00110 Trre-Chr13 863116 863628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00110 8 158 Type I MADS-box Gene Family AT5G60440 39.241 1.21e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre13g00110 SRF-TF 3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00110 - - cam:101502875 223.016