Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00094 ATGGTTTCGCTGAAATTGCAGAAGAGGCTATCAGCTAGCGTGCTGAAATGCGGTAGAGGGAAAGTTTGGCTTGATCCCAATGAAGTCAATGAAATCTCCATGGCCAATTCCAGACAAAACATTAGGAAGCTTGTTAAAGATGGGTTTATTATTAGGAAGCCAACTAAGATTCACTCCCGCTCGCGTGCTCGTAGGATGAAGGAAGCTAAGAGGAAAGGACGTCACTCTGGATACGGTAAGCGCAAGGGTACAAGGGAGGCAAGACTTCCTACCAAAATTCTTTGGATGAGGAGGATGCGTGTGCTTAGACGATTGCTCCGTAAGTACAGGGAGTCAAAGAAAATTGACAAACACATGTACCATGATATGTACATGAAGGTGAAGGGTAATGTTTTCAAGAACAAGAGAGTTTTGATGGAGAGTATTCACAAGTCCAAGGCTGAGAAGGCAAGAGAGAAGACTTTGTCTGACCAGTTTGAGGCAAAGCGTGCAAAGAACAAGGCAAGCAGGGAAAGGAAATTCGCTAGGCGCGAGGAACGATTCGCTCAAGGTCCTGGTGAAAAGCAACCGCCGTCCACTGCCCCACCTGCCACAACACCCCAACCTGCCCAGGCGCCAAAGAAAACCAAGAAGTGA 636 0.4717 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREERFAQGPGEKQPPSTAPPATTPQPAQAPKKTKK 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00094 211 MobiDBLite consensus disorder prediction 144 211 - -
Trre13g00094 211 FunFam Ribosomal protein L19 1 56 - -
Trre13g00094 211 FunFam Ribosomal protein L19 57 191 - -
Trre13g00094 211 PANTHER 60S RIBOSOMAL PROTEIN L19 1 188 IPR039547 GO:0003723|GO:0003735|GO:0022625
Trre13g00094 211 MobiDBLite consensus disorder prediction 57 85 - -
Trre13g00094 211 MobiDBLite consensus disorder prediction 144 184 - -
Trre13g00094 211 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Trre13g00094 211 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Trre13g00094 211 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Trre13g00094 211 Gene3D - 57 189 - -
Trre13g00094 211 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Trre13g00094 211 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Trre13g00094 211 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Trre13g00094 211 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Trre13g00094 211 MobiDBLite consensus disorder prediction 57 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00094 Trre-Chr13 801228 802798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00094 1 211 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 83.886 3.45e-127 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00094 K02885 - cave:132172726 350.517