Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00092 ATGACAAAGTGGCCTGTGCTTGGAATGCTACCTGCTTTCGTACACAACTTATCCAACATTAACAACTATTTAACTTTAACTTTGAAACAAAATGGAGGAACATTCTATTTTGAAGGACCATGGTTAGCAAACTTGGACACTGTTTTCACCAGTGATCCGAGGAACGTGCAACACATCACAAGCACAAAATTTGCAAACTATGCTAAAGGAGATCATTTCAGAGAGATTTTTGATATTCTTGGAGAAGGAATTTTCAGGGCTGAGTCCCACGTATGGAAGTACAGTAGAACACTACTTCATTCAATTTTCAAACAAGAAAGTTTTCGTGCATTTATTCAAAAAACAGTTGAGGAAAAAGTTTGTAATGGCCTTCTTGTGTTTCTTGACAATGCTTGTAAAGAAGGTGTGCAAGTGGATTTACAAGATGTTTTTCAAAGGTTAACTTTTGACAACATATGTTCTGTAGTTTTAGGATATGATCCTAATTGTCTTTCTATTGATCTCCCTATAATTATATGTGAGAGAGCCTTTACACAATCAGAGAACACATTGTTCTATAGACATGTAAAGCCAAAATTCTTGTGGAAGTTGCAAAATTGGTTTCAAGTTGGTCTAGAGAAAGAATTTATAGAGAATAATAAAATTCTTGATAAAATGTTGTATTCAGAAATCAAATCTAGAAGAGAAATGCAAGGACAACAAAATTTTAACTTGCTAAATATTATTATGAATGAAGTAAGAGATGAAAAAAATCCAATATATGATAAGCTTTTGATAGATGATAAGTTTTTGAGAGATACATCAATTAATCTACTTGCAGCTGGAAGAGACACTATTAGTTCTTGCCTTAGTTGGTTTTTTTGGTTAGTGGCAACACATCCTTTGGTTGAAGCTAAGATTCTTGAAGAGATCAAAGAAAATTTACCATCAAGAGAACATAATTGGAAAGATTTAGGGACAAAAGGGCTTAGCAAGTTAGTTTATCTACATGGAGCTTTATGTGAAACCTTAAGGCTTTATCCACCAATTCCTCTTGAGCATAAATGTGCATCGGAGCCGGATGTTCTTCCTAGTGGACATAGGATTAAGTCCAATGCAACGATAGTGTATTCGCTTTACGCAATTGGAAGGGTCGAGGAAATATGGGGAAAAGATTGCTTGGAGTTTAAGCCAGAGAGATGGATTTCGCCGAAAGGAGGGATAGTTCATGTACCGTCTTACAAGTTTATTGCTTTTAATGCTGGACCAAGGAGTTGTTTGGGAAAGGATATAAGCTTCATTGAGTTGAAAATTGTTGCTGCAGCTATATTGTCAAATTATCACATTCAACTAATGAAAGATCATCCAATAATCCCAAGTACTTCTGTTGTCCTACACATGAAACAAGGATTGATGGTTAATGTCAAAAAAAGAAGTATTTGA 1422 0.3488 MTKWPVLGMLPAFVHNLSNINNYLTLTLKQNGGTFYFEGPWLANLDTVFTSDPRNVQHITSTKFANYAKGDHFREIFDILGEGIFRAESHVWKYSRTLLHSIFKQESFRAFIQKTVEEKVCNGLLVFLDNACKEGVQVDLQDVFQRLTFDNICSVVLGYDPNCLSIDLPIIICERAFTQSENTLFYRHVKPKFLWKLQNWFQVGLEKEFIENNKILDKMLYSEIKSRREMQGQQNFNLLNIIMNEVRDEKNPIYDKLLIDDKFLRDTSINLLAAGRDTISSCLSWFFWLVATHPLVEAKILEEIKENLPSREHNWKDLGTKGLSKLVYLHGALCETLRLYPPIPLEHKCASEPDVLPSGHRIKSNATIVYSLYAIGRVEEIWGKDCLEFKPERWISPKGGIVHVPSYKFIAFNAGPRSCLGKDISFIELKIVAAAILSNYHIQLMKDHPIIPSTSVVLHMKQGLMVNVKKRSI 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00092 473 Gene3D Cytochrome P450 1 473 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00092 473 SUPERFAMILY Cytochrome P450 3 471 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00092 473 CDD CYP86A 35 464 - -
Trre13g00092 473 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 412 421 IPR017972 GO:0005506|GO:0016705
Trre13g00092 473 PRINTS E-class P450 group I signature 263 280 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00092 473 PRINTS E-class P450 group I signature 419 442 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00092 473 PRINTS E-class P450 group I signature 330 348 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00092 473 PRINTS E-class P450 group I signature 409 419 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00092 473 PRINTS E-class P450 group I signature 283 309 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00092 473 Pfam Cytochrome P450 3 460 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00092 473 PANTHER CYTOCHROME P450 3 465 - -
Trre13g00092 473 PRINTS P450 superfamily signature 419 430 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00092 473 PRINTS P450 superfamily signature 331 342 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00092 473 PRINTS P450 superfamily signature 410 419 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00092 473 PRINTS P450 superfamily signature 274 291 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00092 Trre-Chr13 790887 792833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00092 1 472 Cytochrome P450 AT2G23180 44.075 5.11e-150 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00092 - - tpra:123890719 881.322