Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00081 ATGCGGATGAGTTGTAACGGTTGTAGAGTACTAAGAAAAGGTTGTAGTGAAAATTGTAGCATAAGACCTTGTTTACAATGGATCAAAAACCCTGAATCACAAGCTAATGCCACCGTCTTTCTTGCTAAATTTTACGGTCGTGCCGGACTCATGAACCTTGTTAACGCCGGCCCTGAACATCTTCGTCCAGCGATTTTTCGTTCATTGTTGTACGAAGCATGTGGTCGAATAGTGAACCCAATTTACGGTTCAGTCGGTTTATTATGGTCTGGGAGCTGGCAGCTATGTCAAGCTGCGGTGGAAGCCGTTTTGAAAGGCGCGCCGATTACGCCGATAACTTCGGAAGCAGCTGCTAATGGGAGGGGTCCACCACTCAAAGCCTACGACATACGCCATGTGTCGAAAGACGAGAACTCGGCCGCATCGAACGAGTTAACTCAGCAGCGAGTTAAGACTCGGTCTCGAAAGCGGTCGAATTTAGCCAAGCCGAAAGAAACAACCACAGATGAGGAAAAAAGTAGTAATGATAATAAGGGAGTTGAATCCGGTTCAGTTGAACCGGTTGAAGAGGTGATGAACCGGTCAGCAAGTCATGAGTCGTCTATTAGCCACCAGTCTGAGGCGGTCAATGCAGCGGCTGTAGATGGAGAGAGTAAAGAAAGTGAGAGTGAAACTTCGATGATCTTATTTAGAGATGAACCGGAGAAAGAATCGAACCGGAATTTGAAGCAGTCGGACCGAACCAGTGAAAGTGGAGAGGAAAACGTTGGTTTGGAACTTACTCTTGGGCTTGAACCGGTTTCACGTGTTTATCACGTGGTTCCAGTGAAGAAAAGAAGGGTTGAATTGAAGGATTGTGGTGGTGGTTCATGGAATGTGGAGCTTGGACTTCAATACCCGGCTTAG 906 0.468 MRMSCNGCRVLRKGCSENCSIRPCLQWIKNPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPITSEAAANGRGPPLKAYDIRHVSKDENSAASNELTQQRVKTRSRKRSNLAKPKETTTDEEKSSNDNKGVESGSVEPVEEVMNRSASHESSISHQSEAVNAAAVDGESKESESETSMILFRDEPEKESNRNLKQSDRTSESGEENVGLELTLGLEPVSRVYHVVPVKKRRVELKDCGGGSWNVELGLQYPA 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00081 301 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Trre13g00081 301 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 218 - -
Trre13g00081 301 MobiDBLite consensus disorder prediction 194 208 - -
Trre13g00081 301 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Trre13g00081 301 MobiDBLite consensus disorder prediction 159 177 - -
Trre13g00081 301 MobiDBLite consensus disorder prediction 134 257 - -
Trre13g00081 301 PIRSF AS2 1 297 IPR017414 -
Trre13g00081 301 MobiDBLite consensus disorder prediction 217 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00081 Trre-Chr13 728535 729814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00081 1 281 AS2 family AT3G02550 59.717 3.17e-112 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre13g00081 LOB 1.6e-24 No_clan