Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00079 ATGATGGTGGCTCTTACAATTCTTTTATTCATACTAGTGACCATGCTATTCAAACTCTTGTATGAAAACCTCTCATGTTACTTCCTCACTCCACTAAGGATAAAAAAAATCATGGAGATGCAAGGTGTTCGCGGCCCGAAACCTCGGTTCTTCACCGGAAACATCTTGGACATGGCTTCCCTTGTTTCCAAATCAACCTCACAAGACATGAAAACTATAAGCCATGACATTGTCGGTCGTCTTCTTCCTCATTTTCTTCTTTGGTCCTCCCAATTCGGAAAAAGATATATATATTGGAATGGTCCAGAGCCAAGGTTGTGTTTAACAGAAACAGAATTGATCAAAGAGTTTCTTTCAAAATACAGTACAGTATCTGGTAAATCATGGTTACAAAAACAGGGTTCAAAACATTTCATTGGTGAAGGAGTTTTGATGGCAAATGGTGAAAATTGGTATCACCAACGTCACATTGTTGCCCCTGCATTCATGGGCGACAGACTTAAGAGCTATGCAGGGCATATGGTGGAATGCACTAAAGAGATGCTGCACTCACTAGAAAAAGGATTAGAGTGTGGACAAAGTGAGGTGGAGATTGGTGAGTACATGACTAAACTTACAGCAGATATTATCTCAAGAACTGAGTTTGGTACAAGTTATCAAAAGGGAAAGAAAATATTCCATCTACTCACTGCTCTTCAGAGTCTTTGTGCTCAAGCAAGTCGCCATCTTTGCTTTCCTGGAAGCAGGTTTTTCCCAAGCAAGTACAACAGAGAGATAAAGTCATTGAAGATGGAAGTGGAGAGACTATTGATGGAAATAATACAAAGTAGAAAAGATTGTGTTGAGATTGGGAGAAGCAATTCTTATGGGAATGATTTGTTGGGGATACTATTGAATGAAATGCAAAAAAAAGAAACTAGCTTAAATTTGCAACTAGTAATGGATGAATGCAAAACATTTTTCTTTTCAGGACATGAAACAACAGCACTTTTACTCACTTGGACAGTTATGTTACTAGCAATTAATCCATCTTGGCAAGAAAAGGTTAGAGCTGAGGTTAAAAGGGTTTGCAATGGGGGAATTCCCTCTTTGGATCAACTCTCCAAGCTTACTATGTTGCATATGGTAATCAATGAGTCATTGAGGCTCTATCCTCCAGCATCTGTGCTCCCTAGAATGGCCTTTGAAGACATAATATTGGGTGACCTTTATATACCTAAAGGGTTATCCATTTGGATTCCTGTATTGGCTATTCATCATAGTGAAAAACTATGGGGTAAAGATGCAAATGAATTCAATCCAGAGAGGTTTACTTCAAAATCATTCATTCCTAGCCGTTTTTTACCATTTGCTTTTGGGCCAAGAAATTGTGTTGGACAAACATTTGCCTTAATGGAAGCTAAAATTATATTATCCATGTTAATCTCTAAATTTAGCTTCACAATTTCGGATAATTATCGTCACGCACCCGTAGTTGTGCTCACAATTAAGCCCAAATATGGTGTTCAAGTTTGTTTGAAGCCTTTGGAGCCATGA 1536 0.3835 MMVALTILLFILVTMLFKLLYENLSCYFLTPLRIKKIMEMQGVRGPKPRFFTGNILDMASLVSKSTSQDMKTISHDIVGRLLPHFLLWSSQFGKRYIYWNGPEPRLCLTETELIKEFLSKYSTVSGKSWLQKQGSKHFIGEGVLMANGENWYHQRHIVAPAFMGDRLKSYAGHMVECTKEMLHSLEKGLECGQSEVEIGEYMTKLTADIISRTEFGTSYQKGKKIFHLLTALQSLCAQASRHLCFPGSRFFPSKYNREIKSLKMEVERLLMEIIQSRKDCVEIGRSNSYGNDLLGILLNEMQKKETSLNLQLVMDECKTFFFSGHETTALLLTWTVMLLAINPSWQEKVRAEVKRVCNGGIPSLDQLSKLTMLHMVINESLRLYPPASVLPRMAFEDIILGDLYIPKGLSIWIPVLAIHHSEKLWGKDANEFNPERFTSKSFIPSRFLPFAFGPRNCVGQTFALMEAKIILSMLISKFSFTISDNYRHAPVVVLTIKPKYGVQVCLKPLEP 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00079 511 Pfam Cytochrome P450 91 484 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00079 511 PRINTS P450 superfamily signature 323 340 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00079 511 PRINTS P450 superfamily signature 375 386 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00079 511 PRINTS P450 superfamily signature 457 468 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00079 511 PRINTS P450 superfamily signature 448 457 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00079 511 Coils Coil 259 279 - -
Trre13g00079 511 PRINTS E-class P450 group I signature 457 480 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00079 511 PRINTS E-class P450 group I signature 312 329 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00079 511 PRINTS E-class P450 group I signature 447 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00079 511 PRINTS E-class P450 group I signature 415 439 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00079 511 PRINTS E-class P450 group I signature 89 108 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00079 511 PRINTS E-class P450 group I signature 332 358 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00079 511 PRINTS E-class P450 group I signature 205 223 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00079 511 PANTHER CYTOCHROME P450 FAMILY MEMBER 29 501 - -
Trre13g00079 511 Gene3D Cytochrome P450 28 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g00079 511 SUPERFAMILY Cytochrome P450 45 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00079 Trre-Chr13 655742 660395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00079 1 371 Cytochrome P450 AT5G38450 66.489 7.32e-170 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00079 K10717 - gmx:100808392 923.309