Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00078 ATGGCTATCACTTCCTCAATATTAGCAAGAAAAAAAAAGGTTTTGTTCATAATGGGTGCAACTGGAACTGGAAAAACTAAACTTTCCATCAATGTAGGTACTCAATTCCTCTCTGAAATTATTAACTCTGACAAAATTCAAGTCTATAAGGGTCTTGACATTGTCACCAATAAGGTACCAGAATCTGAACGTTGTTCGATTCCACATCACATGTTAGGCATCATCGATGATCCTGATTATGATTTTACTGTGAATGACTTTTGCAAGCATGTGCATGAAGCTCTAGACTTGATTATTGAAAATGGGCACCTACCTATTATTGTAGGAGGGTCAAATTCTTTCCTAAAAATATTAATTGATGATGCATTTCGTTCAAAATATGATTGTTGTTTCATTTGGACAGATGTGTCTTTGCCAATTTTGTTCCAATATTTAGACAAAAGAGTTGATGAAATGGTTGAGAAAGGGTTGGTGGATGAGATTAGAGAATCTTTTGTGCCTGGAGCAAACTGCGAAGCGGGAATTAGAAGGGCGATTGGTGTTCCAGAACTCAATTATTATTTTGAGATAGAAAATAGAAAAGATATTGATGAGGCTCAGAAGGAAAATACACTGAAGGAAGCAATTAAAAATATGAAACAAAACACTTGCAAATTGGCTGAAAATCAACTCTCCAAGATCCATAATATGGTTTATGATCTTGGATGGAAGATGAACAAAATTGATTCTACAAGTGTGTTTGAGGCCCTTTTAAGGGGAGAAGATTATAAACTCTTATACCAAGAGATTGTGGTTAAGCCAAGCATTGAGATTGTGAAGAGATTTCTTGAGGAGACAACTCATGCATTTGAAAATACTAAATATTCAAATGGAAAACACACAATTTGA 888 0.348 MAITSSILARKKKVLFIMGATGTGKTKLSINVGTQFLSEIINSDKIQVYKGLDIVTNKVPESERCSIPHHMLGIIDDPDYDFTVNDFCKHVHEALDLIIENGHLPIIVGGSNSFLKILIDDAFRSKYDCCFIWTDVSLPILFQYLDKRVDEMVEKGLVDEIRESFVPGANCEAGIRRAIGVPELNYYFEIENRKDIDEAQKENTLKEAIKNMKQNTCKLAENQLSKIHNMVYDLGWKMNKIDSTSVFEALLRGEDYKLLYQEIVVKPSIEIVKRFLEETTHAFENTKYSNGKHTI 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00078 295 Gene3D - 11 276 IPR027417 -
Trre13g00078 295 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 11 276 IPR039657 -
Trre13g00078 295 FunFam Adenylate isopentenyltransferase 5, chloroplastic 138 238 - -
Trre13g00078 295 Pfam IPP transferase 47 121 - -
Trre13g00078 295 Pfam IPP transferase 125 225 - -
Trre13g00078 295 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 138 238 - -
Trre13g00078 295 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 201 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00078 Trre-Chr13 644059 644946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00078 125 282 C2H2 Transcription Factor Family AT2G27760 30.601 1.10e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00078 K10760 - gmx:121173984 422.935