Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00047 ATGGGTTCTGAGAATGTGCCCAAAGCAAGTGAACTCTTTCAAGCTCAAGCTCATTTGTATGATCACATCCTTAGTTTCTTGAAACCCATGTCCATCAAGTGGGCAGTTGAACTCAACATACCGGATATCATCCACAATCACGGCCAACCTATTACGCTTCATCAGCTTGTCGCCGCGCTTCAAATTCCAGAACAAAAAACTGCTTGTGTTCGGAGCCTCATGCGTTTATTGACGCACAATAACTTTTTTACAATTGTGATTGTGGACGAGAAAGAAGCATATGATCTTTCTCCAGCATCAGAGCTCCTTGTTAAAGGCACTGATCATTGTTTAACTTCGATGGTTCGGTTGTTAACAAATCCAACTCTTGTTGATTTATATAATCATTTAAGTAAATGGACTTCTGGAGAGAAACTAACAATTTATGACACTGCATTAGGCAAAGATGACTATTGGAGTTTTATTCATCAAAATCCATTACATTTGAAGTATTTCAATGATGCTATGGAAAGTGATTCTCGTGTTGTGAGATTGGCACCAAGAGATTGCAAATCGGTTTTTGACGGTTTAGTTTCTCTGGTAGATGTTGGAGGTGGAACTGGAAACACAGCTAAAATTATTTGTGAAGCATTTCCTATGTTAAAATGCATAGTATTAGACCTTCCACAAGTGGTAGCTGGTTTACCAGGAAATGGCAATTTGAGTTTTATGGGTGGAGACATGTTCCATTCTATACCTCAAACTGATGCAATTTTATTAAAGTGGATTTTGCATGATTGGAATGATGAAGATTGTGTGAAGATACTTAAAAATTGTAAAGAAGCTATTTCAAGAAATGACAAAGGAGGAAAAATCATCATCATAGATATTGTGATAAATGAAAAGCAAGATGAACATGAAATGACAGAAGTAAAGCTCTTCTTTGACATAATTATGATGGCTAGTTTTAATGCAAAAGAAAGAGATGAAGAAAACTGGAAGAAAATCTTCAATGAAGCAGGGTTCACATGTTACAAAATATTTCCTATATTCGGTTTTAGATCACTTATTGAACTTTATGTTTAA 1065 0.3577 MGSENVPKASELFQAQAHLYDHILSFLKPMSIKWAVELNIPDIIHNHGQPITLHQLVAALQIPEQKTACVRSLMRLLTHNNFFTIVIVDEKEAYDLSPASELLVKGTDHCLTSMVRLLTNPTLVDLYNHLSKWTSGEKLTIYDTALGKDDYWSFIHQNPLHLKYFNDAMESDSRVVRLAPRDCKSVFDGLVSLVDVGGGTGNTAKIICEAFPMLKCIVLDLPQVVAGLPGNGNLSFMGGDMFHSIPQTDAILLKWILHDWNDEDCVKILKNCKEAISRNDKGGKIIIIDIVINEKQDEHEMTEVKLFFDIIMMASFNAKERDEENWKKIFNEAGFTCYKIFPIFGFRSLIELYV 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00047 354 Gene3D Vaccinia Virus protein VP39 104 353 IPR029063 -
Trre13g00047 354 PANTHER O-METHYLTRANSFERASE 11 337 IPR016461 GO:0008168
Trre13g00047 354 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 109 352 IPR029063 -
Trre13g00047 354 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Trre13g00047 354 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 354 IPR016461 GO:0008168
Trre13g00047 354 SUPERFAMILY "Winged helix" DNA-binding domain 10 107 IPR036390 -
Trre13g00047 354 Pfam O-methyltransferase domain 127 335 IPR001077 GO:0008171
Trre13g00047 354 FunFam O-methyltransferase ZRP4 105 354 - -
Trre13g00047 354 FunFam Coniferyl alcohol 9-O-methyltransferase 2 103 - -
Trre13g00047 354 Gene3D - 2 103 IPR036388 -
Trre13g00047 354 PIRSF O-mtase 1 354 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00047 Trre-Chr13 389055 390485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00047 29 352 Monolignol Biosynthesis Gene Families AT5G54160 33.234 1.35e-45 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00047 K22588 K13262 gmx:100813225 394.43