Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00038 ATGGGTGATGAAAGTGGCGGTTTGAGTGCTAATAAAGGCGTTCCTCAAGAGGATGAGGGAAATACTACACCTTTTCCAGATAGGGTTCAAGTAGGAGGTTCGCCCGTGTTCAAAGTGGAGAGGAAACTTGGCAAAGGTGGATTTGGACAGGTTTTTGTTGGTCGTCGAGTTACCGGTGGTAATGACCGCCTGAATGGACCCGGTGCCACTGAGGTGGCTTTGAAATTTGAACATAGAAACAGTAAAGGATGTAACTATGGCCCTCCTTATGAGTGGCAAGTGTACAACACCCTTGGTGGAAGTCATGGAATACCTAAAGTACATTATAAAGGTAGACAAGGAGAATATTATGTGATGGTTATGGACATGCTTGGTCCAAGCTTGTGGGATGTATGGAATTCCTCAGGCCAGTCGATGTCTGCAGAAATGGTTGCATGTATTGCTGTTGAGTCATTGTCGATCTTAGACAAGATGCACTCAAGGGGATATGTGCATGGAGATGTAAAACCAGAGAACTTTTTACTAGGTCAGCCGGGTACAGCACAAGAGAAGAAATTGTTTCTTGTTGACCTTGGTTTAGCAACAAAATGGAGAGACACCTCCACTGGGCAGCATGTTGAATATGATCAACGCCCTGATATGTTCAGAGGAACTGTTCGGTATGCAAGTGTTCATGCTCATTTGGGAAGAACTGCTAGTAGAAGGGATGATCTTGAATCTCTTGCATATACACTTATTTTCCTTCATAAAGGCCGGTTACCATGGCAAGGTTATCAGGGAGATAACAAGTCCTATCTTGTTTGCAAAAAGAAGATGGGAACATCTCCTGAGATGCTATGCTGCTTCTGCCCTGCTCCTTTCAGACATTTTCTTGAGTTTGTAGTGAACATGAAATTTGACGAAGAACCTAACTATTCCAAGCTAATATCCTTATTTGATAGTGTACTTGGACCAAATCCTGCACTGCGGCCAATTAATACTGAAGGTGCTCAAAAGGTTGGGCAAAAGAGAGGTAGATTGAATATTGAGGAAGAAGATGATTCACAGCCCAAAAAGAAGGTTCGTTTGGGGGTTCCTGCCACACAATGGATATCAATTTACAATGCAAGAATGCCAATGAAGCAAAGGTATCATTACAATGTAGCGGATGGAAGATTAGCGCAACATGTAGAGCGAGGGATTGCAGATGGCCTTCTCATTAGTTGTGTGGCTTCTTGTTCCAATCTCTGGGCACTTATTATGGATGCAGGAACTGGTTTTACAAATCAAGTTTACAAGTTGTCACCTTTTTTCTTACACAAGGAATGGATCATGGAGCAGTGGGAGAAGAATTATTACATTACTTCTATTGCTGGGGTTACTAATGGGAGCTCTCTTGTGGTGATGTCAAAAGGCACACAGTATACACAACAATCATACAAAGTAAGCGAGTCTTTCCCCTTCAAATGGATAAACAAGAAGTGGAGAGAAGGTTTTCACGTGACTTCAATGGCCACTGCTGGAAGTCGCTGGGGTGTAGTTATGTCACGGAATGCTGGATTCAGTGATCAGGTTGTTGAACTTGATTTTCTCTATCCTAGCGAAGGAATCCATAGACGATGGGATAATGGTTACAGGATCACAGCAACTGCTGCTACATGGGATCAATCTGCTCTTATATTAAGCAAACCGAGACGAAGGCCTGCTGACGAAACTCAGGAAACTCTTAGGACATCTCAATTTCCAAGCACACATGTTAAGGAAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGACGTACAGTATGCTGA 1800 0.4283 MGDESGGLSANKGVPQEDEGNTTPFPDRVQVGGSPVFKVERKLGKGGFGQVFVGRRVTGGNDRLNGPGATEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGEYYVMVMDMLGPSLWDVWNSSGQSMSAEMVACIAVESLSILDKMHSRGYVHGDVKPENFLLGQPGTAQEKKLFLVDLGLATKWRDTSTGQHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDNKSYLVCKKKMGTSPEMLCCFCPAPFRHFLEFVVNMKFDEEPNYSKLISLFDSVLGPNPALRPINTEGAQKVGQKRGRLNIEEEDDSQPKKKVRLGVPATQWISIYNARMPMKQRYHYNVADGRLAQHVERGIADGLLISCVASCSNLWALIMDAGTGFTNQVYKLSPFFLHKEWIMEQWEKNYYITSIAGVTNGSSLVVMSKGTQYTQQSYKVSESFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWDNGYRITATAATWDQSALILSKPRRRPADETQETLRTSQFPSTHVKEKWSKNLYLACLCYGRTVC 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00038 599 CDD STKc_CK1 37 312 - -
Trre13g00038 599 ProSitePatterns Protein kinases ATP-binding region signature. 43 75 IPR017441 GO:0005524
Trre13g00038 599 MobiDBLite consensus disorder prediction 1 32 - -
Trre13g00038 599 ProSiteProfiles Protein kinase domain profile. 37 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00038 599 PANTHER CASEIN KINASE-RELATED 37 567 - -
Trre13g00038 599 SUPERFAMILY Protein kinase-like (PK-like) 37 320 IPR011009 -
Trre13g00038 599 Gene3D Transferase(Phosphotransferase) domain 1 22 357 - -
Trre13g00038 599 SMART serkin_6 37 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00038 599 Pfam Protein kinase domain 37 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00038 599 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Trre13g00038 599 FunFam casein kinase 1-like protein HD16 10 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00038 Trre-Chr13 327157 333888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00038 155 317 MAP Kinase Kinase Kinase AT5G50180 24.848 3.22e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Trre13g00038 Pkinase 9.6e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00038 - - gmx:100819969 1169.45