Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00037 ATGAAACTAGTAGCTCCCATCTCTCATTCGTATCCTGAACCTCTTGCAAAATATGACGATGTTGTGGCAAATCCCAAGCTCTTCATGCTTACGTTGGAGAAACTTCATGCTTCTATGGGTACCAAGTTCATGATTCCAATTATTGGAGGAAAAGAACTAGATTTGTGTCGACTCTTTGTTGAAGTGACTTCTCGTGGAGGGATTGAGAAGCTTATGAAAGAGAGAAGATGGAAAGAAGTAACAGCAACTTTCAATTTTCCATCAACGGCGACAAATGCTTCCTTTGTGCTTAGAAAATATTATTCTTCATTACTTTATCACTATGAACAAATATACTATTTTAGAGTCAATCGATGGACGCCTACACCTTATGATGCTTTGCAAAATCAATCAGCCATGTCAACTCCTGCTTCAATCGCACAATTTTTGCAGCATTCTCCAACAACACAACCAATTGAATTTCAAAAGTCAAGGGTTCATGCTTCTGAATTGCCTCAAGTGTCATTTTCAAGATCTTCAATTGTTGGAGTTATTGATGGAAAGTTTGAAAATGGATATTTAGTTTCAGTTCCATTAGGTTCAGAGATACTCAAAGGTGTATTATATGAGTCTCCACATCACATTATGATCAATAATAATAACATTGCTTCTGCTGCATTGGGGGTCCAACGTCGTCGCCGTAGAAGAAAGAAGTCAGAAATAAAAAGGAGAGATCCTGCTCATCCAAAACCCAACAGAAGTGGTTACAATTTCTTCTTTGCTGAGCAACATGCAAGGCTAAAGCTACTAAACCAAACCATGGACAAGGATATTAGTAGAATGATTGGTGAATTATGGAACAACTTAAAAGAGTCTGAAAAAACAGTTTATCAAGAAAAGGCTATTGAGGATAAAGAGAGGTACCAGGCAGAAATGGAAGATTATTGCGAAAAATTGAAGTCGGACACTGGAATCGATGACGCGCTGCCGATGCAACAACATTTTCCAGAAGCAAATTCAGCATTGGTGGATGTTGACATAAAAATGCTTGACTCATTTCAAACTCCTGAGGAGAGTTTTTCTAGTGGAAGTGATTATGTTGCAGATGATATCAACATGGACGCTTCTTCAGGTGGAGCAAAAGTTGATTCTATAGCTTTTATGCATTCAGAAAAACCAATTAAGGAAGGAGTTATTGAACTTCTTAGCCATTGCGAGGAGAAAAAAGAGGATGTTGGCGGATTTCAACAAACTCAAAAGATGAATGAGGGTCAAAACATGTTATCCTTACTTTAG 1275 0.3788 MKLVAPISHSYPEPLAKYDDVVANPKLFMLTLEKLHASMGTKFMIPIIGGKELDLCRLFVEVTSRGGIEKLMKERRWKEVTATFNFPSTATNASFVLRKYYSSLLYHYEQIYYFRVNRWTPTPYDALQNQSAMSTPASIAQFLQHSPTTQPIEFQKSRVHASELPQVSFSRSSIVGVIDGKFENGYLVSVPLGSEILKGVLYESPHHIMINNNNIASAALGVQRRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLNQTMDKDISRMIGELWNNLKESEKTVYQEKAIEDKERYQAEMEDYCEKLKSDTGIDDALPMQQHFPEANSALVDVDIKMLDSFQTPEESFSSGSDYVADDINMDASSGGAKVDSIAFMHSEKPIKEGVIELLSHCEEKKEDVGGFQQTQKMNEGQNMLSLL 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00037 424 SMART bright_3 23 114 IPR001606 GO:0003677
Trre13g00037 424 Pfam HMG (high mobility group) box 242 308 IPR009071 -
Trre13g00037 424 Gene3D High mobility group box domain 226 321 IPR036910 -
Trre13g00037 424 MobiDBLite consensus disorder prediction 222 236 - -
Trre13g00037 424 SUPERFAMILY ARID-like 21 115 IPR036431 GO:0003677
Trre13g00037 424 Coils Coil 291 311 - -
Trre13g00037 424 SUPERFAMILY HMG-box 230 313 IPR036910 -
Trre13g00037 424 SMART ARID_2 19 109 - -
Trre13g00037 424 MobiDBLite consensus disorder prediction 408 424 - -
Trre13g00037 424 CDD ARID_HMGB9-like 24 109 IPR045303 GO:0003677
Trre13g00037 424 SMART hmgende2 241 310 IPR009071 -
Trre13g00037 424 Gene3D - 15 120 IPR036431 GO:0003677
Trre13g00037 424 ProSiteProfiles ARID domain profile. 22 113 IPR001606 GO:0003677
Trre13g00037 424 Pfam ARID/BRIGHT DNA binding domain 26 109 IPR001606 GO:0003677
Trre13g00037 424 MobiDBLite consensus disorder prediction 221 248 - -
Trre13g00037 424 MobiDBLite consensus disorder prediction 405 424 - -
Trre13g00037 424 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 8 332 - -
Trre13g00037 424 CDD HMG-box_AtHMGB9-like 242 308 - -
Trre13g00037 424 FunFam High mobility group B protein 15 16 130 - -
Trre13g00037 424 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 242 309 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00037 Trre-Chr13 319529 324848 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00037 5 342 ARID Transcription Factor Family AT1G04880 56.180 9.92e-120 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trre13g00037 ARID 7.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00037 - - gmx:100783284 459.529