Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00036 ATGGCATCAACATGTTTTGTTAACAAGAATGAATTCCCTATGAAACTAGTAGCTCCCATCTCTCATTCGTATCCTGAACCTCTTGCAAAATATGACGATGTTGTGGCAAATCCCAAGCTCTTCATGCTTACGTTGGAGAAACTTCATGCTTCTATGGGTACCAAGTTCATGATTCCAATTATTGGAGGAAAAGAACTAGATTTGTGTCGACTCTTTGTTGAAGTGACTTCTCGTGGAGGGATTGAGAAGCTTATGAAAGAGAGAAGATGGAAAGAAGTAACAGCAACTTTCAATTTTCCATCAACGGCGACAAATGCTTCCTTTGTGCTTAGAAAATATTATTCTTCATTACTTTATCACTATGAACAAATATACTATTTTAGAGTCAATCGATGGACGCCTACACCTTATGATGCTTTGCAAAATCAATCAGCCATGTCAACTCCTGCTTCAATCGCACAATTTTTGCAGCATTCTCCAACAACACAACCAATTGAATTTCAAAAGTCAAGGGTTCATGCTTCTGAATTGCCTCAAGTGTCATTTTCAAGATCTTCAATTGTTGGAGTTATTGATGGAAAGTTTGAAAATGGATATTTAGTTTCAGTTCCATTAGGTTCAGAGATACTCAAAGGTGTATTATATGAGTCTCCACATCACATTATGATCAATAATAATAACATTGCTTCTGCTGCATTGGGGGTCCAACGTCGTCGCCGTAGAAGAAAGAAGTCAGAAATAAAAAGGAGAGATCCTGCTCATCCAAAACCCAACAGAAGTGGTTACAATTTCTTCTTTGCTGAGCAACATGCAAGGCTAAAGCTACTAAACCAAACCATGGACAAGGATATTAGTAGAATGATTGGTGAATTATGGAACAACTTAAAAGAGTCTGAAAAAACAGTTTATCAAGAAAAGGCTATTGAGGATAAAGAGAGGTACCAGGCAGAAATGGAAGATTATTGCGAAAAATTGAAGTCGGACACTGGAATCGATGACGCGCTGCCGATGCAACAACATTTTCCAGAAGCAAATTCAGCATTGGTGGATGTTGACATAAAAATGCTTGACTCATTTCAAACTCCTGAGGAGAGTTTTTCTAGTGGAAGTGATTATGTTGCAGATGATATCAACATGGACGCTTCTTCAGGTGGAGCAAAAGTTGATTCTATAGCTTTTATGCATTCAGAAAAACCAATTAAGGAAGGAGTTATTGAACTTCTTAGCCATTGCGAGGAGAAAAAAGAGGATGTTGGCGGATTTCAACAAACTCAAAAGATGAATGAGGGTCAAAACATGTTATCCTTACTTTAG 1314 0.3775 MASTCFVNKNEFPMKLVAPISHSYPEPLAKYDDVVANPKLFMLTLEKLHASMGTKFMIPIIGGKELDLCRLFVEVTSRGGIEKLMKERRWKEVTATFNFPSTATNASFVLRKYYSSLLYHYEQIYYFRVNRWTPTPYDALQNQSAMSTPASIAQFLQHSPTTQPIEFQKSRVHASELPQVSFSRSSIVGVIDGKFENGYLVSVPLGSEILKGVLYESPHHIMINNNNIASAALGVQRRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLNQTMDKDISRMIGELWNNLKESEKTVYQEKAIEDKERYQAEMEDYCEKLKSDTGIDDALPMQQHFPEANSALVDVDIKMLDSFQTPEESFSSGSDYVADDINMDASSGGAKVDSIAFMHSEKPIKEGVIELLSHCEEKKEDVGGFQQTQKMNEGQNMLSLL 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00036 437 Pfam HMG (high mobility group) box 255 321 IPR009071 -
Trre13g00036 437 SMART bright_3 36 127 IPR001606 GO:0003677
Trre13g00036 437 FunFam High mobility group B protein 15 29 143 - -
Trre13g00036 437 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Trre13g00036 437 Gene3D - 28 133 IPR036431 GO:0003677
Trre13g00036 437 MobiDBLite consensus disorder prediction 234 261 - -
Trre13g00036 437 CDD HMG-box_AtHMGB9-like 255 321 - -
Trre13g00036 437 SUPERFAMILY ARID-like 34 128 IPR036431 GO:0003677
Trre13g00036 437 Coils Coil 304 324 - -
Trre13g00036 437 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 255 322 IPR009071 -
Trre13g00036 437 MobiDBLite consensus disorder prediction 421 437 - -
Trre13g00036 437 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 21 345 - -
Trre13g00036 437 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Trre13g00036 437 SMART ARID_2 32 122 - -
Trre13g00036 437 Gene3D High mobility group box domain 239 334 IPR036910 -
Trre13g00036 437 SMART hmgende2 254 323 IPR009071 -
Trre13g00036 437 MobiDBLite consensus disorder prediction 235 249 - -
Trre13g00036 437 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Trre13g00036 437 MobiDBLite consensus disorder prediction 418 437 - -
Trre13g00036 437 SUPERFAMILY HMG-box 243 326 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00036 Trre-Chr13 319490 324848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00036 1 355 ARID Transcription Factor Family AT1G04880 54.960 3.15e-120 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trre13g00036 ARID 8.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00036 - - gmx:100783284 468.388