Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00033 ATGGCCTCATCTTTGGAGGACCTTCTTCGAGAAGAAGGATTCAAAGGAAGCAGCAAAAAAGTGCATAGGTCAACATCTTCCTTCCACCATGGTGCTTCAAGTGATCCACTTCACTCTTTAGAAGAGAGACTTTGTGTATCATCAAGTGAAAGAATCAAAACACAGAAAACAAAGTCTAAAACAGCCTCAAGATATCAGATTAACAATACAAGAGACAATAAGACCACAAGGTCAAGGGATAATAATAATGTTTTTATAGAAAATGAGATAAATCACGGACTGTTGAAGAACGATGAATCTGAGAAGAACAAGTCTTATAATTCATCAGAGAGTGATAGTGGATTTGAAGATGTTTATTCAGATCAAGTATCTGATGCGAAAAGAGGCAAAGACAAGTATTTTAAGGAAAAATTGGTGGAAAAGCCAGTCAAGGATTCATATATGCTTAGACAATTGAGTGGAAATAGAAAGAATGTAAAACACCAAGAAAAATTGCAAACTATATCGAATAATAATAGCAAAAGCTTTGAAAATAGCAGGAACAAAAATAGCCATCAATTTCAAGCTGATCCTAGTCTGGCTATTGATGAAATTGCTGTGAAAGCACTAGTTTCCATTCTGAATGGATACATAGAAAATTTCCTAAAAGACGAAGATTTTCGATCTGCGATGCGCCACAATTGTTTCTCCTCCTTGAATTTTATTCAACTTGAGGAAGAAGAAAACAATTCTGAGACCAAAGTGATTACAAGTCTTGAGCAAGCAATTGAGTGCATAGAAAAAACTGCTGATGAGGAAGAACCTAAATCTGCAACAAATCTGAAAAGAGCAACAATTCAGCTTAGCATTATTGCAGGTTTGAGTTTGAATGATCTCAAGTATGATCTTACTTGCGGGATACCAAATTTCAAGTTATCAGCCTGTGCTCATCTTTACCTCAGTGTGGTATATATGATACAAATGAAAAAGAAAGTTTCAGCAAAGCATCTTTTGCAAGTCTTTCATGATTCACCTTTTCAGGCGCGGACGTTATTGTTGGCTGAGCTTTGGGAGCGTTTGTTTTCTCCGCAATTTTTTCAATTGAAGAAATGGTATAATGACAAGGAAGGTGAAATTGTTGTAGATACACCAAGCAGAAAACCAAGAAAGTTAAAGATTCTTCAAAAATTGTATAATGAAAATTTGGATTCAGGAACTCAAACTTTTGCTTTATATTACAAAGATTGGCTCAGTGAAGGAGTAGAAACTCCAACTCTTCCTTCTATTGGAATTCCATCCTTATCTGTTAAGAGTCGACAGGGAAGTTCATTTGGTCATTCTTTTGAGTCTGCTAGCTCAAATGAACCATTCTCACCACAGGCAATGGTCAGCAAGAAGCTATATGATTCTTTCTTTGGTGGATATAGTAAACCTCAGGTCTATGTTGTTGATGAAGATAAGGATGAAGACAGTTATGAAAAATGTGAGAGAGGCTCTTATGGTTCAACTGTCGTTAAAAAAACAGTAATATACGAATCCGAAACTGTTAAATTTATTGATCAAAGTGATGAAGATTTCACTCCAAGTGTTCCAGTTCATGCATTCCATTCTCAGAAAGGAACATCAAGGACAGCTGCAGAAGAATGGAAAGAGAAGAATTCCAGAAATGGTACTAGAAAATATTTCTCCATAGAAACTAATTTAAACAGTAACATAGTTGATGCTCTACCACAAGAAAAAGGAAATGAAATTTCTCTCAGAAAGGTGCAGCCAAATAAGATAAGCTCTACTCTTGAAGGATCATATTTTCCAACCATACCACAGGAATTTATTTGTCCACTGACAAGAAAGATCTTTGAGGAGCCAGTCACCTTAGAATCTGGTCAAACCTTTGAAAGAAAAGCCATCAAGGCATGGTTTCAAAAAGGAAACAGAACATGTCCAGTAACAGGAAATACTTTAGAATGTGTATTCATGCCATTTACCAACCTTATTTTGAAGCGTTTGATCGATAACTGGAAGTCAGAAGATTTTGATCGCCTTCTTGATTTCGCCTCTCAAGCGGTGGAAAATTCAGAGGTACTTAAGTTGAAAAAGCACGACGAGGCTATAGTTTTCAAGTTACAAAGTCTTTTCTCTTCCTTGAAAGAAGAGGAAAAATCAAGTTATGCAAAGCATATAATATCTTTAGGAGTTTTTCCATTTATTTTCAGAAGATTTGAACTAGGAAATATGGAAGAAAAATCACTTGTTTTGGAGATCTTGTTAAATTGTATTCAAGCAGACTCTAGTTGCATATACAAGATAGCAAGAAGTGTCAACAAAAAATTTCTTCTTGAGCTTCTTCACAGCAAGGAGGTTACACCAACAACAAACACATTTCTCTTCCTTACTGAACTTTTGTCAATGAAGAGGAGAAAGGATGTTACTTCTTTCATAAGTGGCTTGGTGAGTGAAGATGTAGTTAGTACAATGGATATTGTGCTCATGTATCTCAAGAATTCTTCTCCAATTGAAAAGCCTCTCATTGCCGTTCTCTTATTACACTTTGATCTACCGGTTGAGCAGCCTCAAAAGCATAGCATATACATAGAGAATGCCGTGAATGCCATTGCAGAGGCGCTTGATGCCAGCTTAAATGACGAGAATGTCCAAAAGAAGTGTTGCAGAGCTCTATTAATCTTGTGTGGCCATTTTTCTTCCACTGGAAAGATACCAGCCAAGACTACCATCTTAAAGCAAGCAGGTTATAATAATGGTAGCATAGAATTGAAATCTCCTAGCCATGATGAAGAGGATCAACGCTTAGATATAACCATTTCATCGGAAGATGATGAAGAAGAAAGGCATGAAGAGTTCATGATGAACTTGTTAGAAACATTGATTGGAGATGGAGAAAGTCCATTTTTGAAGAGCATATCTAGATGTTTAGATTCTACACATGTAGATTTGGTGAGGGCTAGTCTAATAACTGTTACATGGTTGAGTTCCTCACTATCTAAACAATATAATGCTGGATTGCATCTTCCTGCATTCCTAGCTATCATCTCTCAGCTGAAAGGAATCCTGCAAAATGGAGAACTTGAGCTCAAGACTCTTGCATCTATGTCCTTGTTTAACTTCAGTAAAATATCAGAATGCAGAACACTTTTGAAGATTATGGCAGAAGATATTGCTCCCCTTCTTCATGGACTAGTTGATGTAATATGGACTGCTAAGAAACTCCATGCCATTTTGTGTAGGGAGAATATTTAG 3234 0.3643 MASSLEDLLREEGFKGSSKKVHRSTSSFHHGASSDPLHSLEERLCVSSSERIKTQKTKSKTASRYQINNTRDNKTTRSRDNNNVFIENEINHGLLKNDESEKNKSYNSSESDSGFEDVYSDQVSDAKRGKDKYFKEKLVEKPVKDSYMLRQLSGNRKNVKHQEKLQTISNNNSKSFENSRNKNSHQFQADPSLAIDEIAVKALVSILNGYIENFLKDEDFRSAMRHNCFSSLNFIQLEEEENNSETKVITSLEQAIECIEKTADEEEPKSATNLKRATIQLSIIAGLSLNDLKYDLTCGIPNFKLSACAHLYLSVVYMIQMKKKVSAKHLLQVFHDSPFQARTLLLAELWERLFSPQFFQLKKWYNDKEGEIVVDTPSRKPRKLKILQKLYNENLDSGTQTFALYYKDWLSEGVETPTLPSIGIPSLSVKSRQGSSFGHSFESASSNEPFSPQAMVSKKLYDSFFGGYSKPQVYVVDEDKDEDSYEKCERGSYGSTVVKKTVIYESETVKFIDQSDEDFTPSVPVHAFHSQKGTSRTAAEEWKEKNSRNGTRKYFSIETNLNSNIVDALPQEKGNEISLRKVQPNKISSTLEGSYFPTIPQEFICPLTRKIFEEPVTLESGQTFERKAIKAWFQKGNRTCPVTGNTLECVFMPFTNLILKRLIDNWKSEDFDRLLDFASQAVENSEVLKLKKHDEAIVFKLQSLFSSLKEEEKSSYAKHIISLGVFPFIFRRFELGNMEEKSLVLEILLNCIQADSSCIYKIARSVNKKFLLELLHSKEVTPTTNTFLFLTELLSMKRRKDVTSFISGLVSEDVVSTMDIVLMYLKNSSPIEKPLIAVLLLHFDLPVEQPQKHSIYIENAVNAIAEALDASLNDENVQKKCCRALLILCGHFSSTGKIPAKTTILKQAGYNNGSIELKSPSHDEEDQRLDITISSEDDEEERHEEFMMNLLETLIGDGESPFLKSISRCLDSTHVDLVRASLITVTWLSSSLSKQYNAGLHLPAFLAIISQLKGILQNGELELKTLASMSLFNFSKISECRTLLKIMAEDIAPLLHGLVDVIWTAKKLHAILCRENI 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00033 1077 PANTHER OS04G0584500 PROTEIN 581 1075 - -
Trre13g00033 1077 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 598 671 IPR013083 -
Trre13g00033 1077 ProSiteProfiles U-box domain profile. 598 673 IPR003613 GO:0004842|GO:0016567
Trre13g00033 1077 SUPERFAMILY ARM repeat 708 1059 IPR016024 -
Trre13g00033 1077 SUPERFAMILY RING/U-box 593 669 - -
Trre13g00033 1077 Coils Coil 235 255 - -
Trre13g00033 1077 SMART Ubox_2 602 666 IPR003613 GO:0004842|GO:0016567
Trre13g00033 1077 MobiDBLite consensus disorder prediction 1 122 - -
Trre13g00033 1077 Gene3D - 687 1072 IPR011989 -
Trre13g00033 1077 CDD RING-Ubox_PUB 600 648 IPR045210 -
Trre13g00033 1077 MobiDBLite consensus disorder prediction 164 185 - -
Trre13g00033 1077 Pfam U-box domain 599 669 IPR003613 GO:0004842|GO:0016567
Trre13g00033 1077 MobiDBLite consensus disorder prediction 92 106 - -
Trre13g00033 1077 MobiDBLite consensus disorder prediction 153 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00033 Trre-Chr13 289380 294418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00033 595 676 U-box Gene Family AT5G09800 40.964 9.68e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00033 - - ccaj:109801846 1296.95